G2173882 (LOC106563445)


Basic Information

Item Value
gene id G2173882
gene name LOC106563445
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 30527141 ~ 30529621 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2484552
AGCCAATAGAAACAAATAAACAAAGACATTGTAAAGTTAGTTTAATTtcaacaaaacattttgtgaagcAGCAATCAACAAAACAGTAACTAGGCTGAACCTAAAACTAGGTTTCACTAAGCACAAAGATTGtaaaatatacacattaaaataaaaatatgctTCATCCTTGGATCATCAGATCATAGCATATAAAGAGGAACGATAGTGTTCCATTCACCTTCAGTTTTCCACCTGCTTCGATTTCCTCTGACTCCTGGTCTCTCTAGAGGTGGGGGTTTGAGGGGTGGCGTCAGAGAGGGTGTCTGAGTCAGAGAGGGAGTCTGAGGTCTCTTCAGAGTCTGACTGCTCCCTCTTCGATTGTCTTTTCCCTGACTTATTGTGCAGTTTTCTtttggtggtagtgtgtgtgttcaggtggaCAGTGAGGAAGGCATTGAGGCGGAAACGCATGCCACACAGAGGGCAGACAAAGGGCTTCTCACCTGTGTGAATAGTCTTGTGCGTATACAGCGCGGAGGGCGACTTGAAGGCAGCCTTGCATTCTGCACACTGATAGGGTCTATTTCCTGTGTGTATGTTCATGTGAATGTGTAGGTGGGCTCTTTGCCTAAAACTCTTGCCACACTCCTGACAGGCATGGTTGGGAGTTTTGTGACAACTGTAAATGTGTGCGTTGCGAAGGCTGAGAGTGCGATAGGTCTTGCCGCACTCCTCACAAGAGAAAGGCCTTTCCTTAGAATGTGTCTTACTATGAACATCCAAGCTATGTTGTGTTttaaaacactttccacactcaAGGCATTTTAAGCCACTAATGTGTTTTTGTCTGTGAAACACCCACGTTCCTTGGCCTTTATATGTTGCTTTACATACACAACATGTCCAGGGTCtagttgtgtctgtctgtccgggTCCTTTTACAGCCTCTGCTGACAGTTTATGGGAAGCAATGGATTTCCCACATAGTTGGCAGGTATTTACCATTTCTTTTGCAGTAGTATATGGTTTAAATTGGTTGTAGATGTTTGATGTTTGAGGCAGATGTTTAATACCTGGCATTGGTAATGAGCGGTCTGTCGTATTTGACTGAGAACCCAAGTCTGACTGGGAAATGTCTGTATGATGAGAATGAGTAGATGTACAAAAGCCTGGTGTTCCATCTTGCTGCTGTGGCTTATTATGTGATCTCTGGTTTGTATTTGCCTGTGTTGAGTTAGAGGCCAGTGATTTGTCACCAGGCTCGCACTCCAACCTTTTCTTTTTGCTGGGCTGGTGTGAAATGGGCTGAGAAGAGCCTTTTGGGTCAGAGGTCATAGTGCATTCCTGCCCTCCTGTGATTGCAGGCACTGATACGTTGACCATATGGATGGGTTGCGTACTCTCAGTCCTCAATGATAGCAATTTCTTGAAGATTGGTGGCTGATGGTTGTCTTCTATCATTGACGGAAGTAGAGATACTAAATTATCATATTTTGGCTTCAAATCCTTTACTTCATTCAGGTGAAAATTAGCCCATATGGGATCTTCATTTTTGATGTCCACCATTTCCCGTTTCACATAGTAAGTTTCTGTAGAGTTTTTCACACCTTGTTCTTCGGCAGGTTTCACTGCATTTAGGCCCCCGTTTCCATCTTGATCACATCTGTCAGTCAGAGTCAGCTGAACACCGTTTTCCGGTGAAGATGAACCAAGAGCAAAGCTAAATGGAATCTCAATATCTACAGGTTCTTCTTTCACATGTGCAGCATATGTTTTCCTTTCAACATTAGGCACCCCTTTTTCCTGTTCTGCAAAATAACATGCCCAAATAGGATCCTCAACTTTCATTTCAGAATCAACTTCATTTTTGGTTTTGACAGCTACAGTAGCATTTTCTAGGGACTCTTTTTTAACTGGAGTCATGCCGGATTCAATCTGATAATAATATGACCAAATAGGATCCTCAACTTTCATCTCAGGACATTCAGACATAATCTCACTTTTACACTGAGATAAATCCAATTCACTCGTTTTACTAGACTCTGACTGCTGCTTCTCTTTGGATCTAATTTGAAGGGAGGTCAATGCACTGCATTTGGTCTCTGTAGGTACTTTCTTAACATCACATGGCTCATATGTTACTCCTCCATTGGACAGATCTATTTGTGAGGCTAGAGTAAACACAGGAACATCCATCATAGCTGTTGGTGTCTTGTTACCGACTGGTAATAGCTCTGGATCTCCAGCTCCTGTCTTTGAACCTCCAGGACTACAAACAGGGTCCAGTCTCCAATAGTCCAGGATCTCCTCAACATTCCGAGACACACCCAGATGCTTGTCTAGTCTGAAACTGTCTGAATGTCCCAGCGTCTGCGGCACAGCCTCAGCTCTCAATGACGGGCTCAGACGAAAAAGAGGATGCCCAAAGTGGTCCATCTGTAGTTCCTGATGGGAATCACCTCCTCCAGAGATATTACTCTGGTCCTCAACATTTACAGC
>TU2484553
AGCCAATAGAAACAAATAAACAAAGACATTGTAAAGTTAGTTTAATTtcaacaaaacattttgtgaagcAGCAATCAACAAAACAGTAACTAGGCTGAACCTAAAACTAGGTTTCACTAAGCACAAAGATTGtaaaatatacacattaaaataaaaatatgctTCATCCTTGGATCATCAGATCATAGCATATAAAGAGGAACGATAGTGTTCCATTCACCTTCAGTTTTCCACCTGCTTCGATTTCCTCTGACTCCTGGTCTCTCTAGAGGTGGGGGTTTGAGGGGTGGCGTCAGAGAGGGTGTCTGAGTCAGAGAGGGAGTCTGAGGTCTCTTCAGAGTCTGACTGCTCCCTCTTCGATTGTCTTTTCCCTGACTTATTGTGCAGTTTTCTtttggtggtagtgtgtgtgttcaggtggaCAGTGAGGAAGGCATTGAGGCGGAAACGCATGCCACACAGAGGGCAGACAAAGGGCTTCTCACCTGTGTGAATAGTCTTGTGCGTATACAGCGCGGAGGGCGACTTGAAGGCAGCCTTGCATTCTGCACACTGATAGGGTCTATTTCCTGTGTGTATGTTCATGTGAATGTGTAGGTGGGCTCTTTGCCTAAAACTCTTGCCACACTCCTGACAGGCATGGTTGGGAGTTTTGTGACAACTGTAAATGTGTGCGTTGCGAAGGCTGAGAGTGCGATAGGTCTTGCCGCACTCCTCACAAGAGAAAGGCCTTTCCTTAGAATGTGTCTTACTATGAACATCCAAGCTATGTTGTGTTttaaaacactttccacactcaAGGCATTTTAAGCCACTAATGTGTTTTTGTCTGTGAAACACCCACGTTCCTTGGCCTTTATATGTTGCTTTACATACACAACATGTCCAGGGTCtagttgtgtctgtctgtccgggTCCTTTTACAGCCTCTGCTGACAGTTTATGGGAAGCAATGGATTTCCCACATAGTTGGCAGGTATTTACCATTTCTTTTGCAGTAGTATATGGTTTAAATTGGTTGTAGATGTTTGATGTTTGAGGCAGATGTTTAATACCTGGCATTGGTAATGAGCGGTCTGTCGTATTTGACTGAGAACCCAAGTCTGACTGGGAAATGTCTGTATGATGAGAATGAGTAGATGTACAAAAGCCTGGTGTTCCATCTTGCTGCTGTGGCTTATTATGTGATCTCTGGTTTGTATTTGCCTGTGTTGAGTTAGAGGCCAGTGATTTGTCACCAGGCTCGCACTCCAACCTTTTCTTTTTGCTGGGCTGGTGTGAAATGGGCTGAGAAGAGCCTTTTGGGTCAGAGGTCATAGTGCATTCCTGCCCTCCTGTGATTGCAGGCACTGATACGTTGACCATATGGATGGGTTGCGTACTCTCAGTCCTCAATGATAGCAATTTCTTGAAGATTGGTGGCTGATGGTTGTCTTCTATCATTGACGGAAGTAGAGATACTAAATTATCATATTTTGGCTTCAAATCCTTTACTTCATTCAGGTGAAAATTAGCCCATATGGGATCTTCATTTTTGATGTCCACCATTTCCCGTTTCACATAGTAAGTTTCTGTAGAGTTTTTCACACCTTGTTCTTCGGCAGGTTTCACTGCATTTAGGCCCCCGTTTCCATCTTGATCACATCTGTCAGTCAGAGTCAGCTGAACACCGTTTTCCGGTGAAGATGAACCAAGAGCAAAGCTAAATGGAATCTCAATATCTACAGGTTCTTCTTTCACATGTGCAGCATATGTTTTCCTTTCAACATTAGGCACCCCTTTTTCCTGTTCTGCAAAATAACATGCCCAAATAGGATCCTCAACTTTCATTTCAGAATCAACTTCATTTTTGGTTTTGACAGCTACAGTAGCATTTTCTAGGGACTCTTTTTTAACTGGAGTCATGCCGGATTCAATCTGATAATAATATGACCAAATAGGATCCTCAACTTTCATCTCAGGACATTCAGACATAATCTCACTTTTACACTGAGATAAATCCAATTCACTCGTTTTACTAGACTCTGACTGCTGCTTCTCTTTGGATCTAATTTGAAGGGAGGTCAATGCACTGCATTTGGTCTCTGTAGGTACTTTCTTAACATCACATGGCTCATATGTTACTCCTCCATTGGACAGATCTATTTGTGAGGCTAGAGTAAACACAGGAACATCCATCATAGCTGTTGGTGTCTTGTTACCGACTGGTAATAGCTCTGGATCTCCAGCTCCTGTCTTTGAACCTCCAGGACTACAAACAGGGTCCAGTCTCCAATAGTCCAGGATCTCCTCAACATTCCGAGACACACCCAGATGCTTGTCTAGTCTGAAACTGTCTGAATGTCC
>TU2484549
AGCAATCAACAAAACAGTAACTAGGCTGAACCTAAAACTAGGTTTCACTAAGCACAAAGATTGtaaaatatacacattaaaataaaaatatgctTCATCCTTGGATCATCAGATCATAGCATATAAAGAGGAACGATAGTGTTCCATTCACCTTCAGTTTTCCACCTGCTTCGATTTCCTCTGACTCCTGGTCTCTCTAGAGGTGGGGGTTTGAGGGGTGGCGTCAGAGAGGGTGTCTGAGTCAGAGAGGGAGTCTGAGGTCTCTTCAGAGTCTGACTGCTCCCTCTTCGATTGTCTTTTCCCTGACTTATTGTGCAGTTTTCTtttggtggtagtgtgtgtgttcaggtggaCAGTGAGGAAGGCATTGAGGCGGAAACGCATGCCACACAGAGGGCAGACAAAGGGCTTCTCACCTGTGTGAATAGTCTTGTGCGTATACAGCGCGGAGGGCGACTTGAAGGCAGCCTTGCATTCTGCACACTGATAGGGTCTATTTCCTGTGTGTATGTTCATGTGAATGTGTAGGTGGGCTCTTTGCCTAAAACTCTTGCCACACTCCTGACAGGCATGGTTGGGAGTTTTGTGACAACTGTAAATGTGTGCGTTGCGAAGGCTGAGAGTGCGATAGGTCTTGCCGCACTCCTCACAAGAGAAAGGCCTTTCCTTAGAATGTGTCTTACTATGAACATCCAAGCTATGTTGTGTTttaaaacactttccacactcaAGGCATTTTAAGCCACTAATGTGTTTTTGTCTGTGAAACACCCACGTTCCTTGGCCTTTATATGTTGCTTTACATACACAACATGTCCAGGGTCtagttgtgtctgtctgtccgggTCCTTTTACAGCCTCTGCTGACAGTTTATGGGAAGCAATGGATTTCCCACATAGTTGGCAGGTATTTACCATTTCTTTTGCAGTAGTATATGGTTTAAATTGGTTGTAGATGTTTGATGTTTGAGGCAGATGTTTAATACCTGGCATTGGTAATGAGCGGTCTGTCGTATTTGACTGAGAACCCAAGTCTGACTGGGAAATGTCTGTATGATGAGAATGAGTAGATGTACAAAAGCCTGGTGTTCCATCTTGCTGCTGTGGCTTATTATGTGATCTCTGGTTTGTATTTGCCTGTGTTGAGTTAGAGGCCAGTGATTTGTCACCAGGCTCGCACTCCAACCTTTTCTTTTTGCTGGGCTGGTGTGAAATGGGCTGAGAAGAGCCTTTTGGGTCAGAGGTCATAGTGCATTCCTGCCCTCCTGTGATTGCAGGCACTGATACGTTGACCATATGGATGGGTTGCGTACTCTCAGTCCTCAATGATAGCAATTTCTTGAAGATTGGTGGCTGATGGTTGTCTTCTATCATTGACGGAAGTAGAGATACTAAATTATCATATTTTGGCTTCAAATCCTTTACTTCATTCAGGTGAAAATTAGCCCATATGGGATCTTCATTTTTGATGTCCACCATTTCCCGTTTCACATAGTAAGTTTCTGTAGAGTTTTTCACACCTTGTTCTTCGGCAGGTTTCACTGCATTTAGGCCCCCGTTTCCATCTTGATCACATCTGTCAGTCAGAGTCAGCTGAACACCGTTTTCCGGTGAAGATGAACCAAGAGCAAAGCTAAATGGAATCTCAATATCTACAGGTTCTTCTTTCACATGTGCAGCATATGTTTTCCTTTCAACATTAGGCACCCCTTTTTCCTGTTCTGCAAAATAACATGCCCAAATAGGATCCTCAACTTTCATTTCAGAATCAACTTCATTTTTGGTTTTGACAGCTACAGTAGCATTTTCTAGGGACTCTTTTTTAACTGGAGTCATGCCGGATTCAATCTGATAATAATATGACCAAATAGGATCCTCAACTTTCATCTCAGGACATTCAGACATAATCTCACTTTTACACTGAGATAAATCCAATTCACTCGTTTTACTAGACTCTGACTGCTGCTTCTCTTTGGATCTAATTTGAAGGGAGGTCAATGCACTGCATTTGGTCTCTGTAGGTACTTTCTTAACATCACATGGCTCATATGTTACTCCTCCATTGGACAGATCTATTTGTGAGGCTAGAGTAAACACAGGAACATCCATCATAGCTGTTGGTGTCTTGTTACCGACTGGTAATAGCTCTGGATCTCCAGCTCCTGTCTTTGAACCTCCAGGACTACAAACAGGGTCCAGTCTCCAATAGTCCAGGATCTCCTCAACATTCCGAGACACACCCAGATGCTTGTCTAGTCTGAAACTGTCTGAATGTCC
>TU2484550
AGCAATCAACAAAACAGTAACTAGGCTGAACCTAAAACTAGGTTTCACTAAGCACAAAGATTGtaaaatatacacattaaaataaaaatatgctTCATCCTTGGATCATCAGATCATAGCATATAAAGAGGAACGATAGTGTTCCATTCACCTTCAGTTTTCCACCTGCTTCGATTTCCTCTGACTCCTGGTCTCTCTAGAGGTGGGGGTTTGAGGGGTGGCGTCAGAGAGGGTGTCTGAGTCAGAGAGGGAGTCTGAGGTCTCTTCAGAGTCTGACTGCTCCCTCTTCGATTGTCTTTTCCCTGACTTATTGTGCAGTTTTCTtttggtggtagtgtgtgtgttcaggtggaCAGTGAGGAAGGCATTGAGGCGGAAACGCATGCCACACAGAGGGCAGACAAAGGGCTTCTCACCTGTGTGAATAGTCTTGTGCGTATACAGCGCGGAGGGCGACTTGAAGGCAGCCTTGCATTCTGCACACTGATAGGGTCTATTTCCTGTGTGTATGTTCATGTGAATGTGTAGGTGGGCTCTTTGCCTAAAACTCTTGCCACACTCCTGACAGGCATGGTTGGGAGTTTTGTGACAACTGTAAATGTGTGCGTTGCGAAGGCTGAGAGTGCGATAGGTCTTGCCGCACTCCTCACAAGAGAAAGGCCTTTCCTTAGAATGTGTCTTACTATGAACATCCAAGCTATGTTGTGTTttaaaacactttccacactcaAGGCATTTTAAGCCACTAATGTGTTTTTGTCTGTGAAACACCCACGTTCCTTGGCCTTTATATGTTGCTTTACATACACAACATGTCCAGGGTCtagttgtgtctgtctgtccgggTCCTTTTACAGCCTCTGCTGACAGTTTATGGGAAGCAATGGATTTCCCACATAGTTGGCAGGTATTTACCATTTCTTTTGCAGTAGTATATGGTTTAAATTGGTTGTAGATGTTTGATGTTTGAGGCAGATGTTTAATACCTGGCATTGGTAATGAGCGGTCTGTCGTATTTGACTGAGAACCCAAGTCTGACTGGGAAATGTCTGTATGATGAGAATGAGTAGATGTACAAAAGCCTGGTGTTCCATCTTGCTGCTGTGGCTTATTATGTGATCTCTGGTTTGTATTTGCCTGTGTTGAGTTAGAGGCCAGTGATTTGTCACCAGGCTCGCACTCCAACCTTTTCTTTTTGCTGGGCTGGTGTGAAATGGGCTGAGAAGAGCCTTTTGGGTCAGAGGTCATAGTGCATTCCTGCCCTCCTGTGATTGCAGGCACTGATACGTTGACCATATGGATGGGTTGCGTACTCTCAGTCCTCAATGATAGCAATTTCTTGAAGATTGGTGGCTGATGGTTGTCTTCTATCATTGACGGAAGTAGAGATACTAAATTATCATATTTTGGCTTCAAATCCTTTACTTCATTCAGGTGAAAATTAGCCCATATGGGATCTTCATTTTTGATGTCCACCATTTCCCGTTTCACATAGTAAGTTTCTGTAGAGTTTTTCACACCTTGTTCTTCGGCAGGTTTCACTGCATTTAGGCCCCCGTTTCCATCTTGATCACATCTGTCAGTCAGAGTCAGCTGAACACCGTTTTCCGGTGAAGATGAACCAAGAGCAAAGCTAAATGGAATCTCAATATCTACAGGTTCTTCTTTCACATGTGCAGCATATGTTTTCCTTTCAACATTAGGCACCCCTTTTTCCTGTTCTGCAAAATAACATGCCCAAATAGGATCCTCAACTTTCATTTCAGAATCAACTTCATTTTTGGTTTTGACAGCTACAGTAGCATTTTCTAGGGACTCTTTTTTAACTGGAGTCATGCCGGATTCAATCTGATAATAATATGACCAAATAGGATCCTCAACTTTCATCTCAGGACATTCAGACATAATCTCACTTTTACACTGAGATAAATCCAATTCACTCGTTTTACTAGACTCTGACTGCTGCTTCTCTTTGGATCTAATTTGAAGGGAGGTCAATGCACTGCATTTGGTCTCTGTAGGTACTTTCTTAACATCACATGGCTCATATGTTACTCCTCCATTGGACAGATCTATTTGTGAGGCTAGAGTAAACACAGGAACATCCATCATAGCTGTTGGTGTCTTGTTACCGACTGGTAATAGCTCTGGATCTCCAGCTCCTGTCTTTGAACCTCCAGGACTACAAACAGGGTCCAGTCTCCAATAGTCCAGGATCTCCTCAACATTCCGAGACACACCCAGATGCTTGTCTAGTCTGAAACTGTCTGAATGTCCCAGCGTCTGCGGCACAGCCTCAGCTCTCAATGACGGGCTCAGACGAAAAAGAGGATGCCCAAAGTGGTCCATCTGTAGTTCCTGATGGGAATCACCTCCTCCAGAGATATTACTCTGGTCCTCAACATTTACAGC

Function

NR:

description
uncharacterized protein LOC110510015

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2484552 False 2481 lncRNA 0.43 1 30527141 30529621
TU2484553 False 2346 lncRNA 0.43 1 30527141 30529486
TU2484549 False 2277 lncRNA 0.43 1 30527210 30529486
TU2484550 True 2412 lncRNA 0.44 1 30527210 30529621

Neighbor

gene id symbol gene type direction distance location
LOC110510009 LOC106563450 coding upstream 235938 30264990 ~ 30291203 (+)
zmp:0000001168 LOC106563451 coding upstream 305029 30175504 ~ 30222113 (+)
LOC110510004 LOC106563454 coding upstream 379816 30139343 ~ 30147325 (+)
LOC110510002 LOC106563456 coding upstream 391201 30129518 ~ 30135940 (+)
LOC110510005 LOC106563457 coding upstream 399614 30120517 ~ 30127527 (+)
LOC110510020 LOC106563438 coding downstream 123071 30652692 ~ 30669474 (+)
LOC110509412 LOC106563437 coding downstream 162340 30691961 ~ 30780818 (+)
il13ra2b il13ra2b coding downstream 257123 30786744 ~ 30804819 (+)
LOC110510022 LOC106563433 coding downstream 288224 30817845 ~ 30824144 (+)
LOC110510024 LOC106563431 coding downstream 391867 30921488 ~ 31017638 (+)
G2173878 NA non-coding upstream 3512 30523412 ~ 30523629 (+)
G2173872 NA non-coding upstream 11956 30514961 ~ 30515185 (+)
G2173871 NA non-coding upstream 12813 30514091 ~ 30514328 (+)
G2173869 NA non-coding upstream 14767 30512090 ~ 30512374 (+)
G2173843 LOC106563447 non-coding upstream 58232 30468328 ~ 30468909 (+)
G2173886 NA non-coding downstream 7640 30537261 ~ 30538391 (+)
G2173913 NA non-coding downstream 45793 30575414 ~ 30591179 (+)
G2174000 NA non-coding downstream 212802 30742423 ~ 30742624 (+)
G2174036 NA non-coding downstream 316233 30845854 ~ 30847706 (+)
G2174044 NA non-coding downstream 344185 30873806 ~ 30874737 (+)
G2173841 LOC106563447 other upstream 59017 30463942 ~ 30468124 (+)
G2173761 LOC106563448 other upstream 186450 30336852 ~ 30355090 (+)
G2173754 LOC106563449 other upstream 203526 30319648 ~ 30323615 (+)
G2173675 NA other upstream 389821 30136723 ~ 30137320 (+)
LOC110509998 LOC106563463 other upstream 573331 29952492 ~ 29956193 (+)
G2174785 NA other downstream 788216 31317837 ~ 31318377 (+)
G2175233 psmb6 other downstream 1080923 31610544 ~ 31611469 (+)
LOC110509422 LOC106563560 other downstream 1371360 31820484 ~ 31908546 (+)
G2175413 NA other downstream 1507426 32037047 ~ 32037736 (+)

Expression


Co-expression Network