RNA id: TU2484550


Basic Information

Item Value
RNA id TU2484550
length 2412
lncRNA type antisense_over
GC content 0.44
exon number 1
gene id G2173882
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 30527141 ~ 30529621 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCAATCAACAAAACAGTAACTAGGCTGAACCTAAAACTAGGTTTCACTAAGCACAAAGATTGtaaaatatacacattaaaataaaaatatgctTCATCCTTGGATCATCAGATCATAGCATATAAAGAGGAACGATAGTGTTCCATTCACCTTCAGTTTTCCACCTGCTTCGATTTCCTCTGACTCCTGGTCTCTCTAGAGGTGGGGGTTTGAGGGGTGGCGTCAGAGAGGGTGTCTGAGTCAGAGAGGGAGTCTGAGGTCTCTTCAGAGTCTGACTGCTCCCTCTTCGATTGTCTTTTCCCTGACTTATTGTGCAGTTTTCTtttggtggtagtgtgtgtgttcaggtggaCAGTGAGGAAGGCATTGAGGCGGAAACGCATGCCACACAGAGGGCAGACAAAGGGCTTCTCACCTGTGTGAATAGTCTTGTGCGTATACAGCGCGGAGGGCGACTTGAAGGCAGCCTTGCATTCTGCACACTGATAGGGTCTATTTCCTGTGTGTATGTTCATGTGAATGTGTAGGTGGGCTCTTTGCCTAAAACTCTTGCCACACTCCTGACAGGCATGGTTGGGAGTTTTGTGACAACTGTAAATGTGTGCGTTGCGAAGGCTGAGAGTGCGATAGGTCTTGCCGCACTCCTCACAAGAGAAAGGCCTTTCCTTAGAATGTGTCTTACTATGAACATCCAAGCTATGTTGTGTTttaaaacactttccacactcaAGGCATTTTAAGCCACTAATGTGTTTTTGTCTGTGAAACACCCACGTTCCTTGGCCTTTATATGTTGCTTTACATACACAACATGTCCAGGGTCtagttgtgtctgtctgtccgggTCCTTTTACAGCCTCTGCTGACAGTTTATGGGAAGCAATGGATTTCCCACATAGTTGGCAGGTATTTACCATTTCTTTTGCAGTAGTATATGGTTTAAATTGGTTGTAGATGTTTGATGTTTGAGGCAGATGTTTAATACCTGGCATTGGTAATGAGCGGTCTGTCGTATTTGACTGAGAACCCAAGTCTGACTGGGAAATGTCTGTATGATGAGAATGAGTAGATGTACAAAAGCCTGGTGTTCCATCTTGCTGCTGTGGCTTATTATGTGATCTCTGGTTTGTATTTGCCTGTGTTGAGTTAGAGGCCAGTGATTTGTCACCAGGCTCGCACTCCAACCTTTTCTTTTTGCTGGGCTGGTGTGAAATGGGCTGAGAAGAGCCTTTTGGGTCAGAGGTCATAGTGCATTCCTGCCCTCCTGTGATTGCAGGCACTGATACGTTGACCATATGGATGGGTTGCGTACTCTCAGTCCTCAATGATAGCAATTTCTTGAAGATTGGTGGCTGATGGTTGTCTTCTATCATTGACGGAAGTAGAGATACTAAATTATCATATTTTGGCTTCAAATCCTTTACTTCATTCAGGTGAAAATTAGCCCATATGGGATCTTCATTTTTGATGTCCACCATTTCCCGTTTCACATAGTAAGTTTCTGTAGAGTTTTTCACACCTTGTTCTTCGGCAGGTTTCACTGCATTTAGGCCCCCGTTTCCATCTTGATCACATCTGTCAGTCAGAGTCAGCTGAACACCGTTTTCCGGTGAAGATGAACCAAGAGCAAAGCTAAATGGAATCTCAATATCTACAGGTTCTTCTTTCACATGTGCAGCATATGTTTTCCTTTCAACATTAGGCACCCCTTTTTCCTGTTCTGCAAAATAACATGCCCAAATAGGATCCTCAACTTTCATTTCAGAATCAACTTCATTTTTGGTTTTGACAGCTACAGTAGCATTTTCTAGGGACTCTTTTTTAACTGGAGTCATGCCGGATTCAATCTGATAATAATATGACCAAATAGGATCCTCAACTTTCATCTCAGGACATTCAGACATAATCTCACTTTTACACTGAGATAAATCCAATTCACTCGTTTTACTAGACTCTGACTGCTGCTTCTCTTTGGATCTAATTTGAAGGGAGGTCAATGCACTGCATTTGGTCTCTGTAGGTACTTTCTTAACATCACATGGCTCATATGTTACTCCTCCATTGGACAGATCTATTTGTGAGGCTAGAGTAAACACAGGAACATCCATCATAGCTGTTGGTGTCTTGTTACCGACTGGTAATAGCTCTGGATCTCCAGCTCCTGTCTTTGAACCTCCAGGACTACAAACAGGGTCCAGTCTCCAATAGTCCAGGATCTCCTCAACATTCCGAGACACACCCAGATGCTTGTCTAGTCTGAAACTGTCTGAATGTCCCAGCGTCTGCGGCACAGCCTCAGCTCTCAATGACGGGCTCAGACGAAAAAGAGGATGCCCAAAGTGGTCCATCTGTAGTTCCTGATGGGAATCACCTCCTCCAGAGATATTACTCTGGTCCTCAACATTTACAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2484545 lncRNA upstream 3581 30523412 ~ 30523629 (+) True G2173878
TU2484538 lncRNA upstream 12025 30514961 ~ 30515185 (+) True G2173872
TU2484537 lncRNA upstream 12882 30514091 ~ 30514328 (+) True G2173871
TU2484535 lncRNA upstream 14836 30512090 ~ 30512374 (+) True G2173869
TU2484508 lncRNA upstream 58301 30468328 ~ 30468909 (+) True G2173843
TU2484564 lncRNA downstream 7640 30537261 ~ 30538391 (+) True G2173886
TU2484595 lncRNA downstream 45793 30575414 ~ 30591179 (+) True G2173913
TU2484692 lncRNA downstream 212802 30742423 ~ 30742624 (+) True G2174000
TU2484752 lncRNA downstream 316233 30845854 ~ 30847706 (+) True G2174036
TU2484760 lncRNA downstream 344185 30873806 ~ 30874737 (+) True G2174044
XR_005040397.1 mRNA upstream 236007 30264990 ~ 30291203 (+) False LOC110510009
XM_036967571.1 mRNA upstream 236007 30264992 ~ 30291203 (+) False LOC110510009
XM_036967573.1 mRNA upstream 236008 30266787 ~ 30291202 (+) False LOC110510009
XM_036967572.1 mRNA upstream 236008 30266788 ~ 30291202 (+) True LOC110510009
XM_036968323.1 mRNA upstream 305098 30175505 ~ 30222112 (+) False zmp:0000001168
XM_021591288.2 mRNA downstream 123071 30652692 ~ 30669474 (+) False LOC110510020
XM_021591289.2 mRNA downstream 123073 30652694 ~ 30669474 (+) True LOC110510020
XR_005040536.1 mRNA downstream 162340 30691961 ~ 30778743 (+) False LOC110509412
XM_036968345.1 mRNA downstream 162341 30691962 ~ 30780818 (+) False LOC110509412
XM_036968346.1 mRNA downstream 162341 30691962 ~ 30780818 (+) False LOC110509412
TU2484506 other upstream 59086 30463942 ~ 30468124 (+) True G2173841
TU2484421 other upstream 186519 30336852 ~ 30340691 (+) False G2173761
TU2484414 other upstream 203595 30319648 ~ 30323615 (+) True G2173754
TU2484310 other upstream 389890 30136723 ~ 30137320 (+) True G2173675
TU2484191 other upstream 573400 29952537 ~ 29953810 (+) True LOC110509998
TU2484723 other downstream 292993 30822614 ~ 30824144 (+) True LOC110510022
TU2485681 other downstream 788216 31317837 ~ 31318377 (+) True G2174785
TU2486199 other downstream 1080923 31610544 ~ 31611469 (+) True G2175233
TU2486351 other downstream 1371360 31900981 ~ 31901236 (+) True LOC110509422
TU2486438 other downstream 1507426 32037047 ~ 32037736 (+) True G2175413

Expression Profile