RNA id: TU2484537


Basic Information

Item Value
RNA id TU2484537
length 238
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G2173871
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 30514091 ~ 30514328 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGCAACGGAAGCGTTCCTCTGGTGTTGCTGACggatgccagatcttacaacatCTGGAAAGGCATTTTcagtatcagctaaccacatcatatgttatagcatTCAATTCAAtgcaaggggctttattggcatgggaaacatatgtttacgttCTCCTGCTCCTCCAATAAAAAGTGAACAGAAATGATTACTaacacaagttccaaaagaataaagacatttcaaatgtcatatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2484535 lncRNA upstream 1717 30512090 ~ 30512374 (+) True G2173869
TU2484508 lncRNA upstream 45182 30468328 ~ 30468909 (+) True G2173843
TU2484505 lncRNA upstream 51070 30458174 ~ 30463021 (+) True G2173840
TU2484497 lncRNA upstream 69187 30444622 ~ 30444904 (+) True G2173832
TU2484422 lncRNA upstream 159001 30336852 ~ 30355090 (+) True G2173761
TU2484538 lncRNA downstream 633 30514961 ~ 30515185 (+) True G2173872
TU2484545 lncRNA downstream 9084 30523412 ~ 30523629 (+) True G2173878
TU2484552 lncRNA downstream 12813 30527141 ~ 30529621 (+) False G2173882
TU2484553 lncRNA downstream 12813 30527141 ~ 30529486 (+) False G2173882
TU2484549 lncRNA downstream 12882 30527210 ~ 30529486 (+) False G2173882
XR_005040397.1 mRNA upstream 222888 30264990 ~ 30291203 (+) False LOC110510009
XM_036967571.1 mRNA upstream 222888 30264992 ~ 30291203 (+) False LOC110510009
XM_036967573.1 mRNA upstream 222889 30266787 ~ 30291202 (+) False LOC110510009
XM_036967572.1 mRNA upstream 222889 30266788 ~ 30291202 (+) True LOC110510009
XM_036968323.1 mRNA upstream 291979 30175505 ~ 30222112 (+) False zmp:0000001168
XM_021591288.2 mRNA downstream 138364 30652692 ~ 30669474 (+) False LOC110510020
XM_021591289.2 mRNA downstream 138366 30652694 ~ 30669474 (+) True LOC110510020
XR_005040536.1 mRNA downstream 177633 30691961 ~ 30778743 (+) False LOC110509412
XM_036968345.1 mRNA downstream 177634 30691962 ~ 30780818 (+) False LOC110509412
XM_036968346.1 mRNA downstream 177634 30691962 ~ 30780818 (+) False LOC110509412
TU2484506 other upstream 45967 30463942 ~ 30468124 (+) True G2173841
TU2484421 other upstream 173400 30336852 ~ 30340691 (+) False G2173761
TU2484414 other upstream 190476 30319648 ~ 30323615 (+) True G2173754
TU2484310 other upstream 376771 30136723 ~ 30137320 (+) True G2173675
TU2484191 other upstream 560281 29952537 ~ 29953810 (+) True LOC110509998
TU2484723 other downstream 308286 30822614 ~ 30824144 (+) True LOC110510022
TU2485681 other downstream 803509 31317837 ~ 31318377 (+) True G2174785
TU2486199 other downstream 1096216 31610544 ~ 31611469 (+) True G2175233
TU2486351 other downstream 1386653 31900981 ~ 31901236 (+) True LOC110509422
TU2486438 other downstream 1522719 32037047 ~ 32037736 (+) True G2175413

Expression Profile