RNA id: TU2484692


Basic Information

Item Value
RNA id TU2484692
length 202
lncRNA type intronic
GC content 0.55
exon number 1
gene id G2174000
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 30742423 ~ 30742624 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGCCCCATATCTCTATGTCCTCCACACCACTGCTTAGCTCTGCTCTGCCCCTAGCCCCATATCTCTATGTCCTCCACACCACTGCTTAGCTCTGCTCTGCCACTAGCCCCATATCTCTATGTCCTCCACACCACTGCTTAGCTCTGCCCTGCCCCTAGCCCCATATCTCTATGTCCTCCACACCACTGCTtagctctgctc

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2484595 lncRNA upstream 151244 30575414 ~ 30591179 (+) True G2173913
TU2484564 lncRNA upstream 204032 30537261 ~ 30538391 (+) True G2173886
TU2484552 lncRNA upstream 212802 30527141 ~ 30529621 (+) False G2173882
TU2484752 lncRNA downstream 103230 30845854 ~ 30847706 (+) True G2174036
TU2484760 lncRNA downstream 131182 30873806 ~ 30874737 (+) True G2174044
TU2484763 lncRNA downstream 133961 30876585 ~ 30876847 (+) True G2174047
TU2484765 lncRNA downstream 135634 30878258 ~ 30878523 (+) True G2174049
TU2484766 lncRNA downstream 137486 30880110 ~ 30880807 (+) True G2174050
XM_021591288.2 mRNA upstream 72949 30652692 ~ 30669474 (+) False LOC110510020
XM_021591289.2 mRNA upstream 72949 30652694 ~ 30669474 (+) True LOC110510020
XR_005040397.1 mRNA upstream 451220 30264990 ~ 30291203 (+) False LOC110510009
XM_036967571.1 mRNA upstream 451220 30264992 ~ 30291203 (+) False LOC110510009
XM_036967573.1 mRNA upstream 451221 30266787 ~ 30291202 (+) False LOC110510009
XM_021590223.2 mRNA downstream 44120 30786744 ~ 30804819 (+) False il13ra2b
NM_001246355.1 mRNA downstream 44419 30787043 ~ 30804765 (+) True il13ra2b
XM_036968236.1 mRNA downstream 75221 30817845 ~ 30822853 (+) False LOC110510022
XM_036967375.1 mRNA downstream 178864 30921488 ~ 31015368 (+) False LOC110510024
XM_036967376.1 mRNA downstream 178864 30921488 ~ 31015368 (+) False LOC110510024
TU2484506 other upstream 274299 30463942 ~ 30468124 (+) True G2173841
TU2484421 other upstream 401732 30336852 ~ 30340691 (+) False G2173761
TU2484414 other upstream 418808 30319648 ~ 30323615 (+) True G2173754
TU2484310 other upstream 605103 30136723 ~ 30137320 (+) True G2173675
TU2484191 other upstream 788613 29952537 ~ 29953810 (+) True LOC110509998
TU2484723 other downstream 79990 30822614 ~ 30824144 (+) True LOC110510022
TU2485681 other downstream 575213 31317837 ~ 31318377 (+) True G2174785
TU2486199 other downstream 867920 31610544 ~ 31611469 (+) True G2175233
TU2486351 other downstream 1158357 31900981 ~ 31901236 (+) True LOC110509422
TU2486438 other downstream 1294423 32037047 ~ 32037736 (+) True G2175413

Expression Profile