RNA id: XM_021590223.2


Basic Information

Item Value
RNA id XM_021590223.2
length 2120
RNA type mRNA
GC content 0.47
exon number 10
gene id il13ra2b
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 30786744 ~ 30804819 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCACAGAACCACATCCATGACCACACTCACAGGCTGGGTGGACAGGCTGACAGGGCTTTCACATTCTATTTATACATCTGTTCATCAGGAATCTGATTAAACTGCAGACTCACACTAAATATGAGCTTCCTTGTTTGGCAGAGAATCCAGACTTACAGAGTACAGTACATGACCCCTGAGACATCAATACATGACCCCTGAGACATACTGTAGTCTTTCCCTGCTGCTTCTGCTGCGCTGTAGTTCACCAGAGAATACAAAAGCAGGCACTTCGCACAGCCCTGATTAGATGGTGCAGGCTGTCAAACATCTACACAGGAGCTCTCTCACTCAATTCACAGGGCCAGTTAAGAGAATGCTGAAGAGTAGAAAAGGGTGGTGGCTGACAGCCATATTAATGCTTATATCTGGCTGGAGTCAGTGCATCAAGCCACAAGAAATGACAGTGGATCCTCCTGAGAACGTTGGGGTTGATGACCTTGGCCACCTTGGGCAGCTCGACATCCACTGGACGTCTCCTGTCAGCCTGACCAACGTGACTGACTGCTCAATGAGATACCACCTGGAATACTTCAACACATACCAGAACAGATGGACTGTGATCAGGACTGTACGGACATGGTACCGTGCTCAGTTTGACCTGGAGAAGGAGGTCAGGGTACGGATCTCAACCGTACTGAGGGGAGCCTGCACTAACGGCACTGAGCTAAAGAGCCCCTTCACAAAGATGGTCCTGCCACCCAATAACACAGGTCCAGTTGACTCCAGGGTCCAGGGATTTGGCTGCGTGTTCTACCAGAAGGAGGTCATGGAGTGCACCTGGGAGGTGGGATTAGAGGAGCCAGCCCACTCCAAGCACAGTCTGTACTTTTGGCATCGGGAGATGGAGCAGGCTGAGGAGTGCCCTCAGTACATCCACTCCAATGGGGTCAGGACTGGCTGCACATTCACCAGGGAATCTCTCCCAGAATTTAGTGCTTTCAACATATGTGTGAACAGCTCCTCCCCCAAGGTGGCTTTGAGGTCTGCGTTCTTCTCCCTGCAAGTTCAGAACCACGTGAAGCCTGCAGCCATAGAGGCAGTGCATCTGGAGGCTGGTCTGGACAGGAGGCTCCAGGTGCACTGGGACTTACCCCACGAAAGTATCCCCAGCCACTGCCTGGAGTATGAGGTGGAAACCAGCGAGGGCGTAGGCGGGCAGCAGATGTTGCAGAGGAATGTAACCAGGGAGATGACCCTCACTTTCCTCTCAATGGATGGAGCCCACTGCTTCCGGGTCAGGTCCAGGGTGCACCACTACTGTGCTGACAGAGGCTTCTGGAGTGATTGGAGTCGTTGGTTCTGTCACCCAGAGCAACCTCCTGGTTTTGTGTCAGATGCTGTGGTGGTCTGTGCGCTGGTCATCGTGGTCATCATCTCCATGGTGATCCTGTCTCTGTGTGGCCTGGCACTCTGGACAAAGTGTAAaggcagagagggggaaacaATGCATTTCTGTCCCCTGCACAAACTGATGGAATACTCCAAAGGACTCACTGCTTGTGATCCTTTTCCCAATAAAACAAGGAACAAGTAGTAGCCTTTGCAAGCATTACCTGGGGGCCCACAAACCATGAAGACATAGAAGTTACGCAGGTGATTAACACACACGCTCCTACGCACCCACACACCCTTATGCACCAAAAAATGAGGAAGAGACAGTAAATAACCATTGTCATGTTCAAGACAGTAATATTGATATGTATACTGATATTAATCTCTTACGTACTGATGTGTTCAACTTAATGTTGCTCAATACAATATTAAATAGTCTTGCCAAACAGTTTATGCAATGTAAGACTCCAGGCATTAAGCTACACAGTatatcctttaaaaaaaatgccaCAGCTCTTTATACCCATTTTGTTTATTTACTACATGTATTTTAAATCACAAATTATACTGAAGTAATTGTTCCTAGTAGTTTGCCATTGTATAAagttgaatgtcattgtatgaaGTTGAATGTATCTTAAGTCATTTGCATAGAATTCCCAAGCCTGTTAACATTAAATGTGTTGGATGGTGTTGTGAAGTCATGTTTTATAAAACTATGCTTCTTGTCTATACCTATAAAGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2484692 lncRNA upstream 44120 30742423 ~ 30742624 (+) True G2174000
TU2484595 lncRNA upstream 195565 30575414 ~ 30591179 (+) True G2173913
TU2484564 lncRNA upstream 248353 30537261 ~ 30538391 (+) True G2173886
TU2484550 lncRNA upstream 257123 30527210 ~ 30529621 (+) True G2173882
TU2484553 lncRNA upstream 257258 30527141 ~ 30529486 (+) False G2173882
TU2484752 lncRNA downstream 41035 30845854 ~ 30847706 (+) True G2174036
TU2484760 lncRNA downstream 68987 30873806 ~ 30874737 (+) True G2174044
TU2484763 lncRNA downstream 71766 30876585 ~ 30876847 (+) True G2174047
TU2484765 lncRNA downstream 73439 30878258 ~ 30878523 (+) True G2174049
TU2484766 lncRNA downstream 75291 30880110 ~ 30880807 (+) True G2174050
XM_036968345.1 mRNA upstream 5926 30691962 ~ 30780818 (+) False LOC110509412
XM_036968346.1 mRNA upstream 5926 30691962 ~ 30780818 (+) False LOC110509412
XM_036968347.1 mRNA upstream 5926 30691962 ~ 30780818 (+) False LOC110509412
XM_036968348.1 mRNA upstream 5926 30691962 ~ 30780818 (+) False LOC110509412
XM_036968349.1 mRNA upstream 5926 30691962 ~ 30780818 (+) True LOC110509412
XM_036968236.1 mRNA downstream 13026 30817845 ~ 30822853 (+) False LOC110510022
XM_036967375.1 mRNA downstream 116669 30921488 ~ 31015368 (+) False LOC110510024
XM_036967376.1 mRNA downstream 116669 30921488 ~ 31015368 (+) False LOC110510024
XM_036967372.1 mRNA downstream 116669 30921488 ~ 31017638 (+) False LOC110510024
XM_036967374.1 mRNA downstream 116669 30921488 ~ 31017638 (+) False LOC110510024
TU2484506 other upstream 318620 30463942 ~ 30468124 (+) True G2173841
TU2484421 other upstream 446053 30336852 ~ 30340691 (+) False G2173761
TU2484414 other upstream 463129 30319648 ~ 30323615 (+) True G2173754
TU2484310 other upstream 649424 30136723 ~ 30137320 (+) True G2173675
TU2484191 other upstream 832934 29952537 ~ 29953810 (+) True LOC110509998
TU2484723 other downstream 17795 30822614 ~ 30824144 (+) True LOC110510022
TU2485681 other downstream 513018 31317837 ~ 31318377 (+) True G2174785
TU2486199 other downstream 805725 31610544 ~ 31611469 (+) True G2175233
TU2486351 other downstream 1096162 31900981 ~ 31901236 (+) True LOC110509422
TU2486438 other downstream 1232228 32037047 ~ 32037736 (+) True G2175413

Expression Profile