RNA id: TU2484407


Basic Information

Item Value
RNA id TU2484407
length 235
lncRNA type antisense_over
GC content 0.63
exon number 2
gene id G2173747
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 30304213 ~ 30307007 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTTGGGCTCCTCAGGCTGGGGCGGGGTGGGGGTGTGGACCTCAGGCTCCTCCttgtcccctccctcctcctcagccaGGTGGGAGTGGGCGTAGTGGTAGCTCAGACCCGGACGGTTCTTGTAACGCTTCCCACAGACTGCTGTCACAGGAGTAAGGCTTGTCCTTGTCCTCCAGTGCAGCCGCCGCAGCCTCCAGCTTCTTCTTGGCACTGCTCACACCACGACCCTAAGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2484394 lncRNA upstream 1203 30299699 ~ 30303010 (+) False G2173744
TU2484397 lncRNA upstream 1203 30299699 ~ 30303010 (+) False G2173744
TU2484399 lncRNA upstream 1203 30299699 ~ 30303010 (+) True G2173744
TU2484387 lncRNA upstream 19527 30282006 ~ 30284686 (+) False G2173738
TU2484386 lncRNA upstream 19527 30283730 ~ 30284686 (+) True G2173738
TU2484422 lncRNA downstream 29845 30336852 ~ 30355090 (+) True G2173761
TU2484497 lncRNA downstream 137615 30444622 ~ 30444904 (+) True G2173832
TU2484505 lncRNA downstream 151167 30458174 ~ 30463021 (+) True G2173840
TU2484508 lncRNA downstream 161321 30468328 ~ 30468909 (+) True G2173843
TU2484535 lncRNA downstream 205083 30512090 ~ 30512374 (+) True G2173869
XR_005040397.1 mRNA upstream 13010 30264990 ~ 30291203 (+) False LOC110510009
XM_036967571.1 mRNA upstream 13010 30264992 ~ 30291203 (+) False LOC110510009
XM_036967573.1 mRNA upstream 13011 30266787 ~ 30291202 (+) False LOC110510009
XM_036967572.1 mRNA upstream 13011 30266788 ~ 30291202 (+) True LOC110510009
XM_036968323.1 mRNA upstream 82101 30175505 ~ 30222112 (+) False zmp:0000001168
XM_021591288.2 mRNA downstream 345685 30652692 ~ 30669474 (+) False LOC110510020
XM_021591289.2 mRNA downstream 345687 30652694 ~ 30669474 (+) True LOC110510020
XR_005040536.1 mRNA downstream 384954 30691961 ~ 30778743 (+) False LOC110509412
XM_036968345.1 mRNA downstream 384955 30691962 ~ 30780818 (+) False LOC110509412
XM_036968346.1 mRNA downstream 384955 30691962 ~ 30780818 (+) False LOC110509412
TU2484310 other upstream 166893 30136723 ~ 30137320 (+) True G2173675
TU2484191 other upstream 350403 29952537 ~ 29953810 (+) True LOC110509998
TU2484176 other upstream 407934 29894094 ~ 29896279 (+) True G2173551
TU2484185 other upstream 432896 29869138 ~ 29871317 (+) False LOC110509988
TU2483968 other upstream 641979 29652569 ~ 29662234 (+) True LOC110509970
TU2484414 other downstream 12641 30319648 ~ 30323615 (+) True G2173754
TU2484421 other downstream 29845 30336852 ~ 30340691 (+) False G2173761
TU2484506 other downstream 156935 30463942 ~ 30468124 (+) True G2173841
TU2484723 other downstream 515607 30822614 ~ 30824144 (+) True LOC110510022
TU2485681 other downstream 1010830 31317837 ~ 31318377 (+) True G2174785

Expression Profile