G330437 (exosc2,exos2,LOC106566956)


Basic Information

Item Value
gene id G330437
gene name exosc2,exos2,LOC106566956
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172913.1
NCBI id APWO02000139.1
chromosome length 7081347
location 3141707 ~ 3146762 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU455083
actttttattaaacaaagatcAAAGCTTTTCatacaaaatgtttaaacagtatcaaaacattttacacaaattaacattttaaatatttccttAGTTTCTGGGCCTTTAacagtctgtaaaaaaaaaaaaagtaatgtgtGAATGCTGCAGGACTGTGGATCTCCTGGAATTTGATGACCATTATCTGCCTCAAATCAGCTGCTCCCTGTGCTCGTGTTTATATAGCTTGTGTAGTATCCTCCTGCCTCTTCATCTTGATGCCCTGGTGTAGGGTACAGCCAAAGGAAGCCATTGTTCCCCAGGATTATGGAAGCTCCACAGGGCAGATTGTGGAAATGGGTTTTCTGTCTCTTCACAAGAGATGGTGATACTTGCACCAGTACACCCTGTCCCAACTTGCCGTACTTCAAGCTGCGGGTGTGAAGCGAAAGAGCTCCATCTGAAAAGACGGACTGTACCTCTGCACTGATGAGGTCCCCTTCTTGAAGATAATCTCTCATGGAGAGCTCATCTTCTGCTGATCGCCTCCTCAACTCTCCTCCTGGAAGATTTACTGAGGACAGAAGCAATACAGAGTCCAACCGAGAGTTGGTCTCCACTTTCCAACGTTTCTGCTGAACCTCTGTTATCCTGCCAACCACCACATCACCAACTTCACCATTGAACCGTGTCTTCAGTGGCTTCACACAGATCAGCTTGTTGACACGTTCAACCTCCCCAGCCACTGAGGCTGTGAGCTTCTCATCATCCATGTAGGTTCCATGACCCCTCATAAACCCTGTATCAGATGTGATCACATCTCCCGGGACCACCAGGTGTTTACCCTCAGCGTTAGACAGAGAGCCGGGCAGGGAGATGAGTTTTCGGGCAGTGGGTAATCTCATATCCACAGCCATGCTGTCCCACAGAGCTGTGTTTTCTAAAATGGCTGAGCTCTTCTTCTCTGAAA

Function

symbol description
exosc2 Predicted to enable RNA binding activity. Predicted to be involved in RNA metabolic process. Predicted to act upstream of or within rRNA processing. Predicted to be part of cytoplasmic exosome (RNase complex) and nuclear exosome (RNase complex). Is expressed in immature eye; midbrain hindbrain boundary; and optic tectum. Orthologous to human EXOSC2 (exosome component 2).

NR:

description
PREDICTED: exosome complex component RRP4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU455083 True 950 lncRNA 0.46 8 3141707 3146762

Neighbor

gene id symbol gene type direction distance location
LOC103045876 Rab14,rab14,LOC105889591,LOC103045876,LOC107566859,LOC101069277,LOC103390174,LOC107670386,LOC100710169,LOC107729136 coding upstream 43808 3081905 ~ 3097899 (+)
tbx5 tbx5,LOC107745406,LOC107688016,LOC107670381 coding upstream 176423 2940788 ~ 2965284 (+)
tbx3 tbx3,LOC108410648,LOC107687999,LOC107597930 coding upstream 224461 2908989 ~ 2917246 (+)
med13l med13l coding upstream 538378 2562512 ~ 2603329 (+)
LOC103022378 med13l coding upstream 600569 2417815 ~ 2541138 (+)
spr LOC108429720 coding downstream 2993 3149755 ~ 3155659 (+)
LOC103034071 smyd1 coding downstream 11831 3158593 ~ 3173052 (+)
thnsl2 thnsl2 coding downstream 32633 3179395 ~ 3188140 (+)
dqx1 dqx1 coding downstream 51023 3197785 ~ 3213797 (+)
LOC103043336 NA coding downstream 72861 3219623 ~ 3226802 (+)
G330432 abl1,LOC106563284 non-coding upstream 36989 3104160 ~ 3104718 (+)
G330414 NA non-coding upstream 125484 3010340 ~ 3016223 (+)
G330383 NA non-coding upstream 330462 2810974 ~ 2811245 (+)
G330379 NA non-coding upstream 366852 2774530 ~ 2774855 (+)
G330344 NA non-coding upstream 583844 2557505 ~ 2557863 (+)
LOC103042413 NA non-coding downstream 125896 3272658 ~ 3275208 (+)
G330513 NA non-coding downstream 130861 3277623 ~ 3277822 (+)
G330554 NA non-coding downstream 163569 3310331 ~ 3310723 (+)
G330575 NA non-coding downstream 196026 3342788 ~ 3343128 (+)
G330626 NA non-coding downstream 460956 3607718 ~ 3609659 (+)
G330426 NA other upstream 61440 3059625 ~ 3080267 (+)
G330088 NA other upstream 1334688 1806403 ~ 1807019 (+)
LOC111191813 NA other upstream 1585705 1555603 ~ 1556002 (+)
mast4 NA other upstream 1675211 1275922 ~ 1466496 (+)
srek1 srek1,LOC107681054,LOC107684347,LOC107730337,LOC107574964,LOC107728210 other upstream 1879572 1201248 ~ 1262135 (+)
LOC103033094 LOC108427157 other downstream 130033 3276795 ~ 3281967 (+)
G330618 NA other downstream 404062 3550824 ~ 3553582 (+)
LOC103031528 pbx3,LOC107725095,LOC107668307,LOC107591489 other downstream 793833 3940595 ~ 4019463 (+)
LOC103037957 lmx1b,LOC108427190,LOC105902565,LOC107654328 other downstream 955031 4101793 ~ 4165773 (+)
G330975 NA other downstream 1674380 4821142 ~ 4822152 (+)

Expression


Co-expression Network