G330414


Basic Information

Item Value
gene id G330414
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172913.1
NCBI id APWO02000139.1
chromosome length 7081347
location 3010340 ~ 3016223 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU455045
GTCTGTAAGTGTCTAGGCCAATTCAGTTTTGCCTCAGGTGTCAGGGCTCTGATCATGTTGCCAAGTGTTCTATTAAAGCGTTCTACGGAGCCGTTTCCCATCGGATGATAGGGAGTAGTGTGTGATTTTCTGATGCCAGACAATTTTAAGAGCTCAACAATCAACTCGCTCTCGAAGCTTGGCCCTTGATCACTGTGGATCCTCTCTGGGAATCCATAGATGCAAAAATACCTATCCCAGAGGACTTTTGCCACCTGCTTGGCAGACTGGTCTTTGCAGACAAAAGCTTGGGACAGTCTGGTGAAATGGTCAGTTATAACTAAAACATCTACAGACTTATTGTGCAAGTCCTCAGCTGACCAAAAGTCAATACACACAAGTTCCAATGGCCTAGAGGTGACAATACTTTCCAGGGGTGCTCTTCCATCAGGCTCTAGCACTTTGCTCACAATACAGCGTTGACAGTGGCGGACGTGGTCACGAACATCTCTGTCCATGTGCAGCCAAAAAAATCTCTGCCTGGCAATACTGAGGGTTCTAGACTGGCCCTGGTGACCAGCACTTTCATGAACTCCTTTCAAAACTTTGTCTTTTAGAGACTCAGGAACCACATACTGATGTCGTCTCACCTTTGACATCTGATCACGAGAGATCCTATACAGGATACCATTGTGTAAAACGAGCTTTTCCCAGTGTTTCAGAATTCTCAAAACTGGGACTGTCTCCTTTGACCGCTCTCTCCTTGAAGGTCTGCGGTTTCTTTCTACGTAGAACAACACACGAGAAAGGGTTCTGTCTTGGCACTGGGCATCACGCAGTTCTCTTGCTGAGAAAACAGGCAAGTTGTCCATTCCATCAGGGACAAGTTGGGGCAGGTGGTGTACCATATCTACTCCACGAGTTCTCGCTCCCAATTCCCATTCATTGTGAGAGTCAAAAATGGCGGAAACTTCCTGTGCTGAAACTGACTGAGACAGATTGAATACTGACTGGGCCTGGTGTACAGAAGTGATCTTTTGATTATTACGCGAACATGCTTGACTTGTACTTTCATTCGAAGACCTGAATGTTTCTTCAACCAAGGAGTCTGACATTCCTCTGACCTCACTGAGCAGCGTTTCAAATGGTTCGTGTAACAATCTGTAGCTCACACGTGACTTGATGAAGGGGACACGACTTAGGGCATCTGCTACAACATTCTGTGGACCTGGCACATATTTGATATCGAAAGTGTAGCAAGCCAACTTAGACACCCAGCGCTGTTCACAACAATCGAGTTTTGGCTTTGTCATTATATGGGTGAGCGGATTATTATCTGTCCAAACTGTGAATTCGTGCCCCTTTAACCAATGGCTAAATTTGTCACACACTGACCATTTGAGAGCAAGAAACTCCAGTCTGTGAGCTGGGTAGTTCCTCTGAGAGCGGGTTAGTGTCTTACTTGCAAACGCTATCGGCCTAGCTCTTGTCTCCCCTTCCTGAACCTGTGATAAGACAGCACCAAGTCCATCCAAAGAAGCATCAGTAGAGAGTAGAAAAGGGCGACTAAAATCTGGATGAGCTAACACAACAGAGTTGACAAGGGCTGCTTTAAGTTCATCAACAGAACGGTCATGATCAGAAGTCCAGTCACATGAGCTCAGTTTTCGGCTGGTTACAGCACTCTTGTATACTTTACGGCCTTTCACCTTCCTCTTTTGGCCAGTCAACAATGAAAAGAGGGGTTTAGCGAGAGATGAGTAATTTGGGATGAAATGCTGATAGTAATTTAGCATTCCTAGGAACGAACGAATGCGCTTCTCAGAAGGAGTTACACCATCAGCTTCCATTAAATCTGCCTTGGACATATTTGAGACACTATCTACTTTGCTTGGGTCAGTAGACACACCCCGTTTGTCTATAATGTGCCCAAGGAATTTTACAGACTTTCTTAAAAAGTGGCACTTCTTGGGAGCCAATTTTAGATTATGCCCACGGAGCCTGTTGAACACCATTTCCAAGCGTTCTAGTGCTGTTCTTTCATCAGGAGCGAAAATCAGCAAATCATCGAGGTAACATAACAGACTTAGGAAATTTTGGTCACCAAAAATAGCAGTCATCATGCGCATGAAGCTTCCTGGGCTGTTTGAAAGGCCTTGAGGAAGGCGGCAGTACTGATATAGGCCCATTGGGGTGGTAAAGGCTGAGTATTTTCTGTCATCTTCGTGTAATGGCATATTATAAAAGCCAGAAGTCAAGTCCATTGTACTGAATAAAGAATTTCCGCCAAGTGCAGCCAGACAGTCGGCCTGGTGAGGCAATGGGTGTGCGTCCTTAAGAGTTCTCTTATTCAGCCAACGAAAATCTGTACACAACCGCAATTCCCCGTTTTTCTTCCATACGAGTACCAGAGGTGATGCATACTCGCTGGTGGATTTCTCTATGATTTCTTTCTCCTCCATTTCATTTAAAACCTGTCTCAGTTTTTGGTACTGGCTTGGTGGAACTCTCCGGTAAGGTAGTCTGAATGGTTTTTGATCAGTGAGATGGATCCTATGGACAAATCCTTCTGCTTTTCCACAGTCCAGATGATGGCGTGAAAATATGTCTTCATACTGGACAATTAGGTCAGATAGCTCAGTTCTACACTCCTCTGATACATCACATAGACTTAGGTCCACTTTGTCAAGACCAAGAGATGCTAGCTTCTCTTCAGAGGATACTCTACCCTTCGCTTGATTAGGTGCTGCATGGCTGGGTGGAATGCTCTGAGGGCAGCTTGTCAGTTCAAAATCTTCTACTGCGACACAGGGGAAGACATCTGCAAGCTTTGCGTTGCGTCTCAGTAAAACAGGTTTGTCAGAAATGTTCATGATCCTCAAAGGAACCCATCTGTCACCCCACAAAGGAGTTATAACTCTGGCTACCATAATGCCTCTTGGAACTGAATGAGATGACGTGCATTCAGTCATGACTGCACTGCCTggtgaaactgaagtggtcttcgGCAACTTTCCCCATACAAGATATTCTTGACCAGGTTCAAGGTAGGTGGCAGAATTACACTTCACCGTACCTATTTTGTCTGGTACGTTTTTACCACTCCAGCGGTTTAAACCGGCCAACATGGACAAGAACTGCTCTGTTTCAGGGTCTGGGCAACGTGGCTTGGAAACGGCTCTCCAATAACTGTCACATTTCTTGGATtctcttaaaatgtgttttatcacATTGGTTCCCAGAATTAACTCATCGTGCTGCCCTTCTACTACTAAAGTAGGCACAATCATTTTGCAACCATACACTTCCATTTCAACACTAAAGGCTGATTTTGGACTCACACGTCGACCTCCAACGCCTACTAATGTGACATCACATGAAAACCTGTCAAGCTCAGTTACAGCACCTGCGTCAAGTAGAGTGCGCTCAGCGAATTCATTCATCGTGCATGCCATTGAGCCACTATCCAACATCGCACCCAGTGTCACTTTGTTGCTAATTTTCACAGGTGTATAGAATAAACTGTCACTCTGGCCAACAATTTGTGTGTTCTGAAACACAATGTCTACATTTCCATCTGTACAAACAGAGTCAGTAGTTTGTAGAAAATCTTCAACATCTATTTTGTCTGAATGGGAGTTTACATTATGACCTGTACTTTCCCCCACTGAATACAGGTCGCCTAGTTTCCCTGAGGTAGTCTTGAACTTGTTGTAGGTCTATCTGGGCATTGCTGTTTGGAATGACCAGGGGCTAGACAGCTAAAGCAGAGACGATCAGACTTGCAATGGGACAGTGTGGTGTGACTCCCATCTTTACAGACCTTGCATGGGGTAGAGTTTAAGCCAGGACGAAATCTTTGCTGCTGAGCTCGAGAGGCACTATTGCGTTGTTCCACTTTCAACAGAACTTGCTCCAACATATTCATCATGCGTCCAAGTACAATTCCATCTGACTGATGCGCACTTTTTGAAGGAGAAGGTGACTGGATGTGCTGATCATGAGCCTGAAAGCAAGCTGGAACTGGACAGGTATTAGCAGCGTATGGCATGGCAGGAACATAAGAAGGACATGGAGACATAGGCTTAATATCCATGCCAGCCGGAGGAGTGACATATGCTGTTTGATGTGACTCAGCATCAATAACTGAAACAGGGTGACTCTTAAAGTAGCTGTGGCTGTTAGGTTTAACCGAAGCCCTCAATTCTCTCTGATATTCATCAATTCTTGCTTGAATATCCCTTGATGTCCAGTCACCAATTggtttacatttaaaaacacatgaaaGTTCTGGATCAGAGCAGTGTTTGACAAACATGCGAGCTACTTCTCCACtaatattttccattttccGTCCTTGCCGTCGTAGTCCTTCATCTGCTGTGTCTGCAGCTTTATTAAGCCTGATCCAGTAATCAACAGGGCTTTCCTGAGGCTTGGGCAACGTGGTATAGAAGTCTTCAAGAGGGAGACATGAGGAGGACTCACTAAAGTAGCGTATGACAATGTCATAGATGAGCTCTGGATTCTGTGTCACGTCTAGTGATTCGTTGCTCCTTAGAGCGATCTTCACTACATCTCTGGCTTTGCCCATTAGTCTGCTTAAGATCTCTTCCGCTTGATCAGTCAAtgcacagttttgtttttttagacatGTCTTAGTCATGTCGACCCACTCTTGTACTGAGAATTTGTCAGAACTGTCACCTCTGAACACTTTAGGCTCGTGTTCAGTTTTAACATGTACAGTTACTTGTGGTGTGTCTTGTCTGCTTGAGCATGATACTGTATtatccattgtttttttcttgtcagCATCTTTGTCAAAAAGCCCTGCTGTCATTAGCCTAGTTGCTATTGAGTCACCTATTTGTATGCCTAACTGACCTACAATATCGGCTAAGTGCTCAAGACTAGCACTGTCACACACAGGAGTTGAAGTGTGTGGACTGTCTCTCAAGTACTGCCCCATAGGAGACCAACTTGGGCTATGGCTAAATCCTCTGCCTCTGCCCAAATTAGGTCTTGAATACTCATTTGTTTCACTTTTACTCATTTTctgagccatttttttttttctacgcTGAACAAATTATGTAGtgacaaaacaaatcaaattattaacataatacaataacaatcagcttctcattaaataaaaaaaaattaactggcaCTAAATTATTTCTGACCACCGTTAATGATGCTTGGCAGCTCCCTCGGCGATCTGCGTTGAGCTGATCCTGATGATCCAAATGAAAAGGTCACGGCACCAATGTGGCGGCTCTCCTGCTGCCCTATAGCACTTGTTAGACCCTTTGGTGGGAAGTTAGAAAGACGCGGGGAGGCaggctgtctctttctctcctctggtCTTTATTACTCTGCACATGGTAATATCAGTATGGCATGCAATAAGTAGACCATCCCACATCCTAAAGTACTAGGACAGAACCCTTCTTGAACTGCTTCTATTTCGCTTGCAATGGACATGAATTAAACTTGTATTAAATCACCATTTTGACTAAATCTGAGCTGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU455045 True 5519 lncRNA 0.44 2 3010340 3016223

Neighbor

gene id symbol gene type direction distance location
tbx5 tbx5,LOC107745406,LOC107688016,LOC107670381 coding upstream 45056 2940788 ~ 2965284 (+)
tbx3 tbx3,LOC108410648,LOC107687999,LOC107597930 coding upstream 93094 2908989 ~ 2917246 (+)
med13l med13l coding upstream 407011 2562512 ~ 2603329 (+)
LOC103022378 med13l coding upstream 469202 2417815 ~ 2541138 (+)
LOC103034713 NA coding upstream 611818 2392323 ~ 2398522 (+)
LOC103045876 Rab14,rab14,LOC105889591,LOC103045876,LOC107566859,LOC101069277,LOC103390174,LOC107670386,LOC100710169,LOC107729136 coding downstream 65682 3081905 ~ 3097899 (+)
spr LOC108429720 coding downstream 133532 3149755 ~ 3155659 (+)
LOC103034071 smyd1 coding downstream 142370 3158593 ~ 3173052 (+)
thnsl2 thnsl2 coding downstream 163172 3179395 ~ 3188140 (+)
dqx1 dqx1 coding downstream 181562 3197785 ~ 3213797 (+)
G330383 NA non-coding upstream 199095 2810974 ~ 2811245 (+)
G330379 NA non-coding upstream 235485 2774530 ~ 2774855 (+)
G330344 NA non-coding upstream 452477 2557505 ~ 2557863 (+)
G330327 NA non-coding upstream 482682 2496294 ~ 2527658 (+)
G330328 NA non-coding upstream 509310 2499382 ~ 2501030 (+)
G330432 abl1,LOC106563284 non-coding downstream 87937 3104160 ~ 3104718 (+)
G330437 exosc2,exos2,LOC106566956 non-coding downstream 125484 3141707 ~ 3146762 (+)
LOC103042413 NA non-coding downstream 256435 3272658 ~ 3275208 (+)
G330513 NA non-coding downstream 261400 3277623 ~ 3277822 (+)
G330554 NA non-coding downstream 294108 3310331 ~ 3310723 (+)
G330088 NA other upstream 1203321 1806403 ~ 1807019 (+)
LOC111191813 NA other upstream 1454338 1555603 ~ 1556002 (+)
mast4 NA other upstream 1543844 1275922 ~ 1466496 (+)
srek1 srek1,LOC107681054,LOC107684347,LOC107730337,LOC107574964,LOC107728210 other upstream 1748205 1201248 ~ 1262135 (+)
kcmf1 kcmf1,LOC107691714,LOC107684340,LOC107728200 other upstream 2035676 951301 ~ 974664 (+)
G330426 NA other downstream 43402 3059625 ~ 3080267 (+)
LOC103033094 LOC108427157 other downstream 260572 3276795 ~ 3281967 (+)
G330618 NA other downstream 534601 3550824 ~ 3553582 (+)
LOC103031528 pbx3,LOC107725095,LOC107668307,LOC107591489 other downstream 924372 3940595 ~ 4019463 (+)
LOC103037957 lmx1b,LOC108427190,LOC105902565,LOC107654328 other downstream 1085570 4101793 ~ 4165773 (+)

Expression


Co-expression Network