G330344


Basic Information

Item Value
gene id G330344
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172913.1
NCBI id APWO02000139.1
chromosome length 7081347
location 2557505 ~ 2557863 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU454958
AATATGACTGCAGTCGTTTCAGAAGCTCAGCTTGGAACTGTATAGAGAATCACGTCTCTAACCCGCAAATGATCTTTTCTGAAGCTTTACTTCAGAAAACTCTTAGTGGCCTAggaaagatttatttaaatgcaattacattaaatacagctctggaaaaaaataagagaactcttataaatgatgagtttctttgattttaccaaattaaaaacctctggaatataatcaagaggaagatggacgaacacaagccaacaaaccaagctgaactgcttaatttttttaaccaggagtggcataaaattatccaaaagcagtgtgtaagactggtggaggagactgattaaaaaacagga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU454958 True 359 lncRNA 0.35 1 2557505 2557863

Neighbor

gene id symbol gene type direction distance location
LOC103022378 med13l coding upstream 16367 2417815 ~ 2541138 (+)
LOC103034713 NA coding upstream 158983 2392323 ~ 2398522 (+)
mtfp1 mtfp1 coding upstream 167116 2377709 ~ 2390389 (+)
LOC103023205 LOC108437210,LOC108260282,LOC107670394 coding upstream 204255 2345290 ~ 2353250 (+)
LOC103025811 NA coding upstream 295410 2244875 ~ 2262095 (+)
med13l med13l coding downstream 4649 2562512 ~ 2603329 (+)
tbx3 tbx3,LOC108410648,LOC107687999,LOC107597930 coding downstream 351126 2908989 ~ 2917246 (+)
tbx5 tbx5,LOC107745406,LOC107688016,LOC107670381 coding downstream 382925 2940788 ~ 2965284 (+)
LOC103045876 Rab14,rab14,LOC105889591,LOC103045876,LOC107566859,LOC101069277,LOC103390174,LOC107670386,LOC100710169,LOC107729136 coding downstream 524042 3081905 ~ 3097899 (+)
spr LOC108429720 coding downstream 591892 3149755 ~ 3155659 (+)
G330327 NA non-coding upstream 29847 2496294 ~ 2527658 (+)
G330328 NA non-coding upstream 56475 2499382 ~ 2501030 (+)
G330325 NA non-coding upstream 67490 2489405 ~ 2490015 (+)
G330324 NA non-coding upstream 99791 2454319 ~ 2457714 (+)
G330320 NA non-coding upstream 146395 2410571 ~ 2411110 (+)
G330379 NA non-coding downstream 216667 2774530 ~ 2774855 (+)
G330383 NA non-coding downstream 253111 2810974 ~ 2811245 (+)
G330414 NA non-coding downstream 452477 3010340 ~ 3016223 (+)
G330432 abl1,LOC106563284 non-coding downstream 546297 3104160 ~ 3104718 (+)
G330437 exosc2,exos2,LOC106566956 non-coding downstream 583844 3141707 ~ 3146762 (+)
G330088 NA other upstream 750486 1806403 ~ 1807019 (+)
LOC111191813 NA other upstream 1001503 1555603 ~ 1556002 (+)
mast4 NA other upstream 1091009 1275922 ~ 1466496 (+)
srek1 srek1,LOC107681054,LOC107684347,LOC107730337,LOC107574964,LOC107728210 other upstream 1295370 1201248 ~ 1262135 (+)
kcmf1 kcmf1,LOC107691714,LOC107684340,LOC107728200 other upstream 1582841 951301 ~ 974664 (+)
G330426 NA other downstream 501762 3059625 ~ 3080267 (+)
LOC103033094 LOC108427157 other downstream 718932 3276795 ~ 3281967 (+)
G330618 NA other downstream 992961 3550824 ~ 3553582 (+)
LOC103031528 pbx3,LOC107725095,LOC107668307,LOC107591489 other downstream 1382732 3940595 ~ 4019463 (+)
LOC103037957 lmx1b,LOC108427190,LOC105902565,LOC107654328 other downstream 1543930 4101793 ~ 4165773 (+)

Expression


Co-expression Network