G330432 (abl1,LOC106563284)


Basic Information

Item Value
gene id G330432
gene name abl1,LOC106563284
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172913.1
NCBI id APWO02000139.1
chromosome length 7081347
location 3104160 ~ 3104718 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU455074
CAGGGCTGTCTCCATCTTTGTCCATGTTTCTGCGTAGTGTCCTGGTTTTGGTGGGGAGCTCTGGAGCTTGCTGTAAGGAGCCAAGTGTCAGCTTCTTACTCTTTTTACCCAATTCTTTCTCcacctCGTCGAAGATGCTGGATTCCTGAAACATTGTTTCAAAAGCTTGATGGGTCTCTGCAAAGGAAGGCCTCTCTGCTGGGTTCCATTTCCAACAGGCTCTCATAAGTTCATAGACCTTTTCTGGGCATCCCTCAGGTCTGTCCATGCGGTAGTCTTTCTCTAGTAGCTCATATACCTGAGACAAATCGATCCCAGGGTATGGAGACATCCCATAGGTGGCAATCTCCCACAGCAG

Function

symbol description
abl1 Predicted to enable protein tyrosine kinase activity. Predicted to be involved in regulation of apoptotic process. Predicted to act upstream of or within protein phosphorylation. Human ortholog(s) of this gene implicated in B-lymphoblastic leukemia/lymphoma; acute myeloid leukemia; chronic myeloid leukemia; colorectal cancer; and esophagus adenocarcinoma. Orthologous to human ABL1 (ABL proto-oncogene 1, non-receptor tyrosine kinase).

NR:

description
PREDICTED: tyrosine-protein kinase ABL1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU455074 True 358 lncRNA 0.49 3 3104160 3104718

Neighbor

gene id symbol gene type direction distance location
LOC103045876 Rab14,rab14,LOC105889591,LOC103045876,LOC107566859,LOC101069277,LOC103390174,LOC107670386,LOC100710169,LOC107729136 coding upstream 6261 3081905 ~ 3097899 (+)
tbx5 tbx5,LOC107745406,LOC107688016,LOC107670381 coding upstream 138876 2940788 ~ 2965284 (+)
tbx3 tbx3,LOC108410648,LOC107687999,LOC107597930 coding upstream 186914 2908989 ~ 2917246 (+)
med13l med13l coding upstream 500831 2562512 ~ 2603329 (+)
LOC103022378 med13l coding upstream 563022 2417815 ~ 2541138 (+)
spr LOC108429720 coding downstream 45037 3149755 ~ 3155659 (+)
LOC103034071 smyd1 coding downstream 53875 3158593 ~ 3173052 (+)
thnsl2 thnsl2 coding downstream 74677 3179395 ~ 3188140 (+)
dqx1 dqx1 coding downstream 93067 3197785 ~ 3213797 (+)
LOC103043336 NA coding downstream 114905 3219623 ~ 3226802 (+)
G330414 NA non-coding upstream 87937 3010340 ~ 3016223 (+)
G330383 NA non-coding upstream 292915 2810974 ~ 2811245 (+)
G330379 NA non-coding upstream 329305 2774530 ~ 2774855 (+)
G330344 NA non-coding upstream 546297 2557505 ~ 2557863 (+)
G330327 NA non-coding upstream 576502 2496294 ~ 2527658 (+)
G330437 exosc2,exos2,LOC106566956 non-coding downstream 36989 3141707 ~ 3146762 (+)
LOC103042413 NA non-coding downstream 167940 3272658 ~ 3275208 (+)
G330513 NA non-coding downstream 172905 3277623 ~ 3277822 (+)
G330554 NA non-coding downstream 205613 3310331 ~ 3310723 (+)
G330575 NA non-coding downstream 238070 3342788 ~ 3343128 (+)
G330426 NA other upstream 23893 3059625 ~ 3080267 (+)
G330088 NA other upstream 1297141 1806403 ~ 1807019 (+)
LOC111191813 NA other upstream 1548158 1555603 ~ 1556002 (+)
mast4 NA other upstream 1637664 1275922 ~ 1466496 (+)
srek1 srek1,LOC107681054,LOC107684347,LOC107730337,LOC107574964,LOC107728210 other upstream 1842025 1201248 ~ 1262135 (+)
LOC103033094 LOC108427157 other downstream 172077 3276795 ~ 3281967 (+)
G330618 NA other downstream 446106 3550824 ~ 3553582 (+)
LOC103031528 pbx3,LOC107725095,LOC107668307,LOC107591489 other downstream 835877 3940595 ~ 4019463 (+)
LOC103037957 lmx1b,LOC108427190,LOC105902565,LOC107654328 other downstream 997075 4101793 ~ 4165773 (+)
G330975 NA other downstream 1716424 4821142 ~ 4822152 (+)

Expression


Co-expression Network