LOC111191821


Basic Information

Item Value
gene id LOC111191821
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172914.1
NCBI id APWO02000140.1
chromosome length 931882
location 298353 ~ 301587 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002649692.1
AAATTAACTGTTGGGTTGTTGAACAGCACTAGAAAATGGCTGACACACTGTATATAATAGGGAGTGATTTAAAATGCAgcttaaaaatgtgaaaaaaacaacattttataaTAGTCTCTGCTATGGGCTTTATTTTCAGCAGCTGAAAAATGCAGCCAACCTATCAGCCTATTAGCCACACTAGATTAATGACAAAAACCTATACAATATCAGTAAAAAATCTAATAGCATACTTACAATCTTCCCACAAGTTTCCCACAAGATGTAATGgaattttttttaccagcatTTCTTTCTAGCTAGCTTTACTGACCTATCAACAGTTGCTCTGAAAGACACAGACAGCGATAAAGCACAGCTACTGCACGTGTGCTGCTCAGCAACAGCGAGAGGAAAAAGGAAACCGTGTCAGTGTTTCAATCTGGGAGGTGGTGAACAGGAGGCAGTGTCCTGTTCAGCGCTGCTTTGTCTTACTGAAATCTGCTGTACTGGGCCAGGATTTGAGCAACTGGAGGAAACAAAGAAATATGTTGGATTTGAGGAATTCTGAAGAAATATGGCTAGATTGATGATCATAGAAAAACATCTGTCAGTTTGGAGACTGTCGGTGAAAGCAGGGTCAAATCCCCCAGGGGTGAGTGACCTGTCTTATAAAAGCCCCTGCGGAGGCCAGCTGGACTTCAACTTGGAGCCGTGGGACCCCTCGCTCTGAGGAATTTACATAACAACATAACAGACTGTATTCATGAGGCTGCGAGCGTGTCGGGCCGAGCTCGGGCGGGACGGGGCCTCTGATTTCAGCTCAGAATTGATATTTTGGCCCGGGGCCCGGCGTGAGGGATTACACCAGGCTCTGAAAGGTATTGGTCCATCCTCAGATTTAGCCTTTACATACACGTGCGGTGTGTTTGACCTTAACATGGGAATATTGgagcaacatttctcccaatatCAGATATAGACTTAATATGCAGTCAGAGACTTCACTGACAATGCTTTAAAGAAAGCTATCCATTTTAAATTTGAGGTTAACTACataaaaataactattaaatttaactatattt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002649692.1 True 1067 lncRNA 0.42 4 298353 301587

Neighbor

gene id symbol gene type direction distance location
LOC103046818 gsg1l2,LOC108424863,LOC107653939,LOC107556458,LOC107742606,LOC107387200,LOC107095327,LOC103365387 coding upstream 47855 235804 ~ 250498 (+)
LOC103046004 rcvrn,rcvrnb,LOC107720397 coding upstream 165598 128458 ~ 132755 (+)
trnal-aag_8 NA coding upstream 233722 64550 ~ 64631 (+)
trnal-aag_7 NA coding upstream 236863 61409 ~ 61490 (+)
trnal-uag_5 NA coding upstream 237415 60857 ~ 60938 (+)
LOC103028075 mprip,LOC108273748,LOC102297471,LOC105888873 coding downstream 16542 318129 ~ 369316 (+)
abcc3 abcc3,LOC106589510,LOC107653990 coding downstream 230705 532292 ~ 603116 (+)
LOC103024700 LOC108443184 coding downstream 313431 615018 ~ 619129 (+)
trnal-aag_9 NA coding downstream 622267 923854 ~ 923935 (+)
trnal-uag_6 NA coding downstream 622823 924410 ~ 924491 (+)
LOC111191824 NA non-coding downstream 82842 384429 ~ 391232 (+)
LOC107197834 NA non-coding downstream 89665 391252 ~ 409186 (+)
G331526 LOC108273747,LOC103382276 non-coding downstream 138666 440253 ~ 444193 (+)
LOC111191818 NA non-coding downstream 331229 632816 ~ 640112 (+)
LOC107197833 NA non-coding downstream 482172 783759 ~ 795706 (+)
G331504 NA other upstream 30593 266867 ~ 267760 (+)
LOC103021777 LOC108424855 other downstream 69903 371490 ~ 382784 (+)

Expression


Co-expression Network