CI01000016_05208242_05218239


Basic Information

Item Value
gene id CI01000016_05208242_05218239
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5207419 ~ 5219816 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_05208242_05218239.mRNA
ATTTAGGCGAGCGAGAAGGCGGGGTTTGAATGTGTTGACAGTGCTTCTATTTGCCAGAGTGAGCTGTCGCTCAAGTGTCCCCCTAGGTCAGTGGAACCAATCAAAATCGAGGAAAATTAGGCCAATGAAGAGAGCTCTACAGTATCTGTGTTACGTGTCTGACGTGTCCTTTTCTAGGCAAAACCAACATGTGATTCTGGTTACAACCCAGGACAGAGACAATATGTTTTTCTTAAACAATACTGTAGATGTAAAAGTGTGACATTCGCTATTACCGTCCTGATTGCCTTTTTTTTTTTTTTTTAGAAGATATTTATTTATTTGTTAAATAAATAAATAAAAAAGTTAAGACCTATTGTTTTAATTCAATTAACTAGAACCATCAAACCTGCCGAAAACAAAGTGACAAAAGTAAGCTAGAACACAGCTATACAATATACACATACAGTATACAGTTGTATACAACAATACTTGTATCTGACCAATTGTTGTCATTGATAAGAATTTGCCAGCCTTTATTATGCAGTGGCACAACAGTCATTACAGACTGACCCAGAAAGGGATGCACACAAAGAACATCCAGGGTGATACATGAAGGAGGAATGCATTGTTCTACAGTAGTGGATCTCAACCTTTTTGACTTTAAGGCCCCTCCATTGTCCACAAAAATTTCCATATTGTGGATATTGGGGGCTCCACCCTAACCCCCACTCACAATTTCTACCCAATAAAATATTTTAGAGATCGGCATAACTTGAAAGATGTATATTCGTTCAAAAAATAATCAAATACTAAGAAATATCTTGATTTTTTTAGCTTGTTTTAATGCTTGTTTTTATCTCTTTTTATTATTATTTATTTAAGTAATCTTGAGACCCCCTTGAGAAGTTTGTTGAGGTCCCCTGGTTGAGAACCACTGTTCTACAGGGATCCTCAAGTTAGTATGAGATTATGAAAGAAATTTCCACAATACTTACTGAAATCAGTTTGCTTGTTTTGTATATTGTCTGTAATGTTTTTTTATTGTTCTTATTTATTGCAATATATTCTATATATATTGTGTGAATTGTGAACCTTGTTTTTGTAATGTATACCTTTTTAATGATTTGTATTTATTTAATCTGTTTTTAATCTTGGGGCTGCTAAGGAATATGGAAAATATTTTATATATTTTCAGAAATAAGTTTCGGACCTATCAGAATCGATTGTTTTAATATGATAGAAAGGCCAATTTTCGCCTTCTCAGGCTGTTCATGTGCAGAACATTCTGTCGTCCAATGAGAGAAGGTGGCAGAATTTCCGGCGTCACCATCACCATCATCTTCAGCCATTTTGTTAGAGGTGTTGACGTTCAACCATTGAGTTCGGCGAACTAGTTGATATGGGCTCCAGTATAATCCTAATATCAACTGGAACTTGGTTTATTTAAGGTATTCGGTATAAACCACTGTTAAGCAGCTTTTGTACGCGATTTTCTTCAAAACTTCCTATACTGAACGTTAGAACTATTACTTTTCTCATATTTGCGCAGAATTTTCGGACGAGCTAACAGTAGCTAATTCGTTAGCTCTGCCAAAATGGCTGCGAACGCGGCACAGCAAGCCCCGACAACGAATTGGCCGTATGGTAGTAATTCAGGTGGAGAGGGCCCAGTTCATGAAAACCCAGAATGGGAAAAAGCCAGACAGGCTCTAGCCTCCATCAGTAAAAGTCAGAACTCAACCAAGACTTCACCAACCAATCGCACCACCCAACAGTATGGAGGATCATATCCTCCAGGACAGTATGGTGTTCCAGGGGGCTACCAGACACCCACTACACCCACTGGACAGACCCCCTACAGCCCTAATGGTACCATGCCATACAGCCCTACGGATTCCAACCCCATGATGCGGGGCTACAATCCTGGGCAGATTCGGCCAGGGTACCAGGGTTACCAAGCTCCAGCATATCAGCCCCCTCAGCAGCAGGCTCCAGGACAGGGCCCATATGGAGGCGCAGGCATGGTGGATTGTAAGAAACCTAACGCTGGCAATATGAACAAAGGTGGACAGCAGCTGTGGCAGCGCATGAAACAGGCTCCTGGAACAGGCGCTGTCAAATTTAACATACAAAAGCGCCCGTACGTCATGGCCAGTCAAAACTTCCCTTCAGCTGAGCAGGCCCCTGGATTGGCATCCCCCAATGCGACAAACCCATCGCCTGGGTCTGTTGTTGCAACATCTACAACTTCAGCTGGAAATTCCCAAACTCGGCCTCAGGACTGGCCACAGGCTATGAAAGAGTATGTACAGCGTTGCTTCACAGCCTGTGAATCTGAAGAGGATAAGGATCGTACAGAAAAAGTACTGAAAGACCTTCTGCAGTCCAGACTACAGGATGGCTCTGCTTACACCATCGACTGGACCAGAGAACCACTGCCAGAGAGAATGCTATTGGGAGAGGTGGAGCCACCCGTGGCAGGGGTGGGGCCAGGCTGGGTAACTACAGAAATGTCTTTTCTCAGAGAAGCCCCTCCTCCAGCTCGTCCCACTCCTCATCACGATCCCCATCCCCTCACAGCCGACACAGGGACAGGAGTAGACATCACCGCAGTGATTCTGGCTCCCAATCAGATAGCAGCATGTCAAGTGATCCTCGCCTCCCATTGTCCCGGCGGCAACAAAAGGGTGGCCGAGGCCGTGGGGCAGAAAGAGAGCGAGGTAGAGGAGCTGCAGGAGAGAGAGGCAGAGGAAGAGGCAAAGCAAACAGAGGGCGAAGAAAGTAGCCACTTCAATAAATTGCTAGTAGCCTCATTACCTTCTCCTCTGACTTCTATCAGGAATATGGAAGACCTAACAAGTGGTATTGGTAAAAAGCGGAAAGGTGGTAACGCAGGCCTTGACTTTCACGACCCAAATCGTGAAGCAAAGAAGCAGAGCCGTGCAGCACGCTTCCACACTAAATTACGCACTGAGCCCTTGGTGTTAAACATCAATGTTTTTGACGTCCCCAACGGCACCCAGGAGGGGTTGAGTTGGGATGAATGCCCCATAGTCGGCACCTGCCAGGACATCACCAAAAACTACCTGCGCCTCACCTGTGCTCCTGACCCTGCAACCGTCAGACCTGTATCTGTGTTGCGAAAGTCCCTGATTGCAGTGAAAGCTCATTGGAAAACCAATCAGGATTACTTGTACGCATGTGAACAAATGAAGTCAATACGACAGGATCTCACTGTTCAAGGTGTGCGTACAGACTTCACCGTGGAGGTCTACGAGACTCATGCTCGCATTGCTCTGGAAAAGGGCGACCACGAGGAGTTCAACCAGTGCCAGACCCAGCTGAAGGCGCTGTATAAAGACTGCCCATCAGACAACGTTGGAGAATTCACTGCCTACAGAATTATCTACTACATCTTTACTAAGAATTCTGGAGCTCATGCTCTTGAGCTCCGTACTGCCTGGGCTCTTGGAAACTTCTACCGGTTCTTCAAACTCTATCAGAAAGCTCCACGTATGGCTTCTTACCTTATTGACAAGTTTGCGGAGCGTGAAAGAAATCTAGCACTGAGGGCCATTCTTAAAACGTTCAGGCCCTCTGTGCCGGTGGAGTATGTGCAGTCCAGCTTGGCCTTCCCAGATTTAGACTCATGTTTAGCATTTCTAGCAGGGCTTGGGGTTGCATTCACCCCCTCTGACCCAAGCAAAATAGACTGTAAACCACCTCATTCCTGCAAGGGCATCCACTGTCCTGCTGGGGTTTGGAAACACATGGGTTTGTATGGCTCCTTAAGCTTCGGCCACATCTACTGGTAATGGCTGGTAAGAAGGACTTGATGTTTTGAAAAAGCGTGGTGGATCTTCGTTCAGCTTGGGTTGAGGTGTTACCACTGTTGAACGACATGCTTGGCTTGATGTCTTTTAACCCTGCTGGCAGGTTGTGAATTTGTCATCTCGTTTTGAAACGGGCCTAATACTGAACCCTGTTGCACCCCTTATCTGTAAGATTGACACCAAAAGATCTGCTCATTTTACATGGATATTACTGTGGTGCAGTAGTAAGTCTTAGAGATTCATATGGCATCATGGTCTTAATCTAGCCAATTGAAGCATGAATACATTATAGTAAAAAAAAAAGTTTTATAAAGTTCATCTTATGCTCCTTAATCTCTAATGGACTGCTTTAAATTTATTTGATTGGAGTCGTCACCCAAACATCACTTTCATTGCAAATGAGTGAGGAGCTTTTTAGCATTTCTGCTGTCTAAGTAATCAGATTTATTAAATGCGTTTAACATTCATCGAGCATGGATAAGGCTTGGGTCTGAAATATGTGTGCTTAAGCAAGATGTGCTCAGGGCCACTATGAGCAGAAAGCATCCCTAATATCTCATCTGTGAAATATGTACATACGTGCTCATGCAAATAATGTGCAAAGTGAGATTTATTTTTCTCTCATAATACTTTGGTTTATTATAGTTGATTTTTGTTTGTACAATGGTAAGTCATTTTGATTTATTCAGTCATTTTGCTGGCAGTTTTTAAAGTTTAAACATGTTTTGGGTGGTTAGCAGTGCAAAGTGAAATGTTCACATTAAAATTATTCTAAAATGTCATGCTCCGCTAGACACTAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_05208242_05218239.mRNA True 4620 mRNA 0.43 15 5207419 5219816

Neighbor

gene id symbol gene type direction distance location
CI01000016_05205373_05206602 NA coding downstream 817 5205331 ~ 5206602 (-)
CI01000016_05170621_05189845 LPCAT3 coding downstream 17574 5169714 ~ 5189845 (-)
CI01000016_05151082_05166013 CLSTN3 coding downstream 41406 5151057 ~ 5166013 (-)
CI01000016_05131457_05146340 PEX5 coding downstream 61079 5130748 ~ 5146340 (-)
CI01000016_05124385_05128589 CDCA3 coding downstream 78444 5124259 ~ 5128975 (-)
CI01000016_05233964_05243756 NA coding upstream 13840 5233656 ~ 5244368 (-)
CI01000016_05249001_05286683 EPHB6 coding upstream 27744 5247560 ~ 5286683 (-)
CI01000016_05313099_05322439 SLC2A3B coding upstream 92987 5312803 ~ 5322947 (-)
CI01000016_05325805_05330265 COX6B2 coding upstream 105759 5325519 ~ 5332874 (-)
CI01000016_05374626_05378364 NA coding upstream 154029 5373845 ~ 5386465 (-)
G97012 NA non-coding downstream 2606 5192792 ~ 5204813 (-)
G97139 NA non-coding downstream 15991 5191026 ~ 5191428 (-)
G97135 NA non-coding downstream 83943 5123080 ~ 5123476 (-)
G97045 NA non-coding downstream 133891 5067684 ~ 5073528 (-)
G97037 NA non-coding downstream 236639 4969389 ~ 4970780 (-)
G97148 NA non-coding upstream 121223 5341039 ~ 5341800 (-)
G97160 NA non-coding upstream 182327 5402143 ~ 5402369 (-)
G97165 NA non-coding upstream 191839 5411655 ~ 5411920 (-)
G97180 NA non-coding upstream 333479 5553295 ~ 5553986 (-)
CI01000016_04921091_04922518 NA other downstream 284015 4918975 ~ 4922518 (-)
CI01000016_03921124_03930996 NA other downstream 1276368 3920055 ~ 3931162 (-)
CI01000016_03647744_03675574 NA other downstream 1542106 3647653 ~ 3675585 (-)
G95070 NA other downstream 2221778 2985260 ~ 2985641 (-)
G94786 NA other downstream 2931144 2270836 ~ 2276275 (-)
CI01000016_05412782_05415867 NA other upstream 192443 5412248 ~ 5415906 (-)
G97341 NA other upstream 939170 6158986 ~ 6159721 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 other upstream 3669017 8888833 ~ 8894737 (-)
CI01000016_08926089_08945071 NA other upstream 3716973 8925960 ~ 8945229 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010501 leng8 coding NC_007127.7 CM002900.2 12256527 ~ 12266153 (-)
bowfin (Amia calva) AMCG00001991 NA coding PESF01000024.1 PESF01000024.1 284931 ~ 291280 (-)