RNA id: CI01000016_05208242_05218239.mRNA


Basic Information

Item Value
RNA id CI01000016_05208242_05218239.mRNA
length 4620
RNA type mRNA
GC content 0.43
exon number 15
gene id CI01000016_05208242_05218239
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5207419 ~ 5219816 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTAGGCGAGCGAGAAGGCGGGGTTTGAATGTGTTGACAGTGCTTCTATTTGCCAGAGTGAGCTGTCGCTCAAGTGTCCCCCTAGGTCAGTGGAACCAATCAAAATCGAGGAAAATTAGGCCAATGAAGAGAGCTCTACAGTATCTGTGTTACGTGTCTGACGTGTCCTTTTCTAGGCAAAACCAACATGTGATTCTGGTTACAACCCAGGACAGAGACAATATGTTTTTCTTAAACAATACTGTAGATGTAAAAGTGTGACATTCGCTATTACCGTCCTGATTGCCTTTTTTTTTTTTTTTTAGAAGATATTTATTTATTTGTTAAATAAATAAATAAAAAAGTTAAGACCTATTGTTTTAATTCAATTAACTAGAACCATCAAACCTGCCGAAAACAAAGTGACAAAAGTAAGCTAGAACACAGCTATACAATATACACATACAGTATACAGTTGTATACAACAATACTTGTATCTGACCAATTGTTGTCATTGATAAGAATTTGCCAGCCTTTATTATGCAGTGGCACAACAGTCATTACAGACTGACCCAGAAAGGGATGCACACAAAGAACATCCAGGGTGATACATGAAGGAGGAATGCATTGTTCTACAGTAGTGGATCTCAACCTTTTTGACTTTAAGGCCCCTCCATTGTCCACAAAAATTTCCATATTGTGGATATTGGGGGCTCCACCCTAACCCCCACTCACAATTTCTACCCAATAAAATATTTTAGAGATCGGCATAACTTGAAAGATGTATATTCGTTCAAAAAATAATCAAATACTAAGAAATATCTTGATTTTTTTAGCTTGTTTTAATGCTTGTTTTTATCTCTTTTTATTATTATTTATTTAAGTAATCTTGAGACCCCCTTGAGAAGTTTGTTGAGGTCCCCTGGTTGAGAACCACTGTTCTACAGGGATCCTCAAGTTAGTATGAGATTATGAAAGAAATTTCCACAATACTTACTGAAATCAGTTTGCTTGTTTTGTATATTGTCTGTAATGTTTTTTTATTGTTCTTATTTATTGCAATATATTCTATATATATTGTGTGAATTGTGAACCTTGTTTTTGTAATGTATACCTTTTTAATGATTTGTATTTATTTAATCTGTTTTTAATCTTGGGGCTGCTAAGGAATATGGAAAATATTTTATATATTTTCAGAAATAAGTTTCGGACCTATCAGAATCGATTGTTTTAATATGATAGAAAGGCCAATTTTCGCCTTCTCAGGCTGTTCATGTGCAGAACATTCTGTCGTCCAATGAGAGAAGGTGGCAGAATTTCCGGCGTCACCATCACCATCATCTTCAGCCATTTTGTTAGAGGTGTTGACGTTCAACCATTGAGTTCGGCGAACTAGTTGATATGGGCTCCAGTATAATCCTAATATCAACTGGAACTTGGTTTATTTAAGGTATTCGGTATAAACCACTGTTAAGCAGCTTTTGTACGCGATTTTCTTCAAAACTTCCTATACTGAACGTTAGAACTATTACTTTTCTCATATTTGCGCAGAATTTTCGGACGAGCTAACAGTAGCTAATTCGTTAGCTCTGCCAAAATGGCTGCGAACGCGGCACAGCAAGCCCCGACAACGAATTGGCCGTATGGTAGTAATTCAGGTGGAGAGGGCCCAGTTCATGAAAACCCAGAATGGGAAAAAGCCAGACAGGCTCTAGCCTCCATCAGTAAAAGTCAGAACTCAACCAAGACTTCACCAACCAATCGCACCACCCAACAGTATGGAGGATCATATCCTCCAGGACAGTATGGTGTTCCAGGGGGCTACCAGACACCCACTACACCCACTGGACAGACCCCCTACAGCCCTAATGGTACCATGCCATACAGCCCTACGGATTCCAACCCCATGATGCGGGGCTACAATCCTGGGCAGATTCGGCCAGGGTACCAGGGTTACCAAGCTCCAGCATATCAGCCCCCTCAGCAGCAGGCTCCAGGACAGGGCCCATATGGAGGCGCAGGCATGGTGGATTGTAAGAAACCTAACGCTGGCAATATGAACAAAGGTGGACAGCAGCTGTGGCAGCGCATGAAACAGGCTCCTGGAACAGGCGCTGTCAAATTTAACATACAAAAGCGCCCGTACGTCATGGCCAGTCAAAACTTCCCTTCAGCTGAGCAGGCCCCTGGATTGGCATCCCCCAATGCGACAAACCCATCGCCTGGGTCTGTTGTTGCAACATCTACAACTTCAGCTGGAAATTCCCAAACTCGGCCTCAGGACTGGCCACAGGCTATGAAAGAGTATGTACAGCGTTGCTTCACAGCCTGTGAATCTGAAGAGGATAAGGATCGTACAGAAAAAGTACTGAAAGACCTTCTGCAGTCCAGACTACAGGATGGCTCTGCTTACACCATCGACTGGACCAGAGAACCACTGCCAGAGAGAATGCTATTGGGAGAGGTGGAGCCACCCGTGGCAGGGGTGGGGCCAGGCTGGGTAACTACAGAAATGTCTTTTCTCAGAGAAGCCCCTCCTCCAGCTCGTCCCACTCCTCATCACGATCCCCATCCCCTCACAGCCGACACAGGGACAGGAGTAGACATCACCGCAGTGATTCTGGCTCCCAATCAGATAGCAGCATGTCAAGTGATCCTCGCCTCCCATTGTCCCGGCGGCAACAAAAGGGTGGCCGAGGCCGTGGGGCAGAAAGAGAGCGAGGTAGAGGAGCTGCAGGAGAGAGAGGCAGAGGAAGAGGCAAAGCAAACAGAGGGCGAAGAAAGTAGCCACTTCAATAAATTGCTAGTAGCCTCATTACCTTCTCCTCTGACTTCTATCAGGAATATGGAAGACCTAACAAGTGGTATTGGTAAAAAGCGGAAAGGTGGTAACGCAGGCCTTGACTTTCACGACCCAAATCGTGAAGCAAAGAAGCAGAGCCGTGCAGCACGCTTCCACACTAAATTACGCACTGAGCCCTTGGTGTTAAACATCAATGTTTTTGACGTCCCCAACGGCACCCAGGAGGGGTTGAGTTGGGATGAATGCCCCATAGTCGGCACCTGCCAGGACATCACCAAAAACTACCTGCGCCTCACCTGTGCTCCTGACCCTGCAACCGTCAGACCTGTATCTGTGTTGCGAAAGTCCCTGATTGCAGTGAAAGCTCATTGGAAAACCAATCAGGATTACTTGTACGCATGTGAACAAATGAAGTCAATACGACAGGATCTCACTGTTCAAGGTGTGCGTACAGACTTCACCGTGGAGGTCTACGAGACTCATGCTCGCATTGCTCTGGAAAAGGGCGACCACGAGGAGTTCAACCAGTGCCAGACCCAGCTGAAGGCGCTGTATAAAGACTGCCCATCAGACAACGTTGGAGAATTCACTGCCTACAGAATTATCTACTACATCTTTACTAAGAATTCTGGAGCTCATGCTCTTGAGCTCCGTACTGCCTGGGCTCTTGGAAACTTCTACCGGTTCTTCAAACTCTATCAGAAAGCTCCACGTATGGCTTCTTACCTTATTGACAAGTTTGCGGAGCGTGAAAGAAATCTAGCACTGAGGGCCATTCTTAAAACGTTCAGGCCCTCTGTGCCGGTGGAGTATGTGCAGTCCAGCTTGGCCTTCCCAGATTTAGACTCATGTTTAGCATTTCTAGCAGGGCTTGGGGTTGCATTCACCCCCTCTGACCCAAGCAAAATAGACTGTAAACCACCTCATTCCTGCAAGGGCATCCACTGTCCTGCTGGGGTTTGGAAACACATGGGTTTGTATGGCTCCTTAAGCTTCGGCCACATCTACTGGTAATGGCTGGTAAGAAGGACTTGATGTTTTGAAAAAGCGTGGTGGATCTTCGTTCAGCTTGGGTTGAGGTGTTACCACTGTTGAACGACATGCTTGGCTTGATGTCTTTTAACCCTGCTGGCAGGTTGTGAATTTGTCATCTCGTTTTGAAACGGGCCTAATACTGAACCCTGTTGCACCCCTTATCTGTAAGATTGACACCAAAAGATCTGCTCATTTTACATGGATATTACTGTGGTGCAGTAGTAAGTCTTAGAGATTCATATGGCATCATGGTCTTAATCTAGCCAATTGAAGCATGAATACATTATAGTAAAAAAAAAAGTTTTATAAAGTTCATCTTATGCTCCTTAATCTCTAATGGACTGCTTTAAATTTATTTGATTGGAGTCGTCACCCAAACATCACTTTCATTGCAAATGAGTGAGGAGCTTTTTAGCATTTCTGCTGTCTAAGTAATCAGATTTATTAAATGCGTTTAACATTCATCGAGCATGGATAAGGCTTGGGTCTGAAATATGTGTGCTTAAGCAAGATGTGCTCAGGGCCACTATGAGCAGAAAGCATCCCTAATATCTCATCTGTGAAATATGTACATACGTGCTCATGCAAATAATGTGCAAAGTGAGATTTATTTTTCTCTCATAATACTTTGGTTTATTATAGTTGATTTTTGTTTGTACAATGGTAAGTCATTTTGATTTATTCAGTCATTTTGCTGGCAGTTTTTAAAGTTTAAACATGTTTTGGGTGGTTAGCAGTGCAAAGTGAAATGTTCACATTAAAATTATTCTAAAATGTCATGCTCCGCTAGACACTAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110387 lncRNA downstream 2606 5192792 ~ 5204813 (-) False G97012
TU110388 lncRNA downstream 2606 5196398 ~ 5204813 (-) True G97012
TU110525 lncRNA downstream 15991 5191026 ~ 5191428 (-) False G97139
TU110530 lncRNA downstream 15991 5191226 ~ 5191428 (-) True G97139
TU110521 lncRNA downstream 83943 5123080 ~ 5123476 (-) True G97135
TU110539 lncRNA upstream 121223 5341039 ~ 5341800 (-) True G97148
TU110408 lncRNA upstream 125585 5345401 ~ 5349517 (-) True G97032
TU110551 lncRNA upstream 182327 5402143 ~ 5402369 (-) True G97160
TU110556 lncRNA upstream 191839 5411655 ~ 5411920 (-) True G97165
TU110571 lncRNA upstream 333479 5553295 ~ 5553986 (-) True G97180
CI01000016_05205373_05206602.mRNA mRNA downstream 817 5205331 ~ 5206602 (-) True CI01000016_05205373_05206602
CI01000016_05170621_05189845.mRNA mRNA downstream 17574 5169714 ~ 5189845 (-) True CI01000016_05170621_05189845
CI01000016_05151082_05166013.mRNA mRNA downstream 41406 5151057 ~ 5166013 (-) True CI01000016_05151082_05166013
CI01000016_05131457_05146340.mRNA mRNA downstream 61079 5130748 ~ 5146340 (-) True CI01000016_05131457_05146340
CI01000016_05124385_05128589.mRNA mRNA downstream 78444 5124259 ~ 5128975 (-) True CI01000016_05124385_05128589
CI01000016_05233964_05243756.mRNA mRNA upstream 13840 5233656 ~ 5244368 (-) True CI01000016_05233964_05243756
CI01000016_05249001_05286683.mRNA mRNA upstream 27744 5247560 ~ 5286683 (-) True CI01000016_05249001_05286683
CI01000016_05313099_05322439.mRNA mRNA upstream 92987 5312803 ~ 5322947 (-) True CI01000016_05313099_05322439
CI01000016_05325805_05330265.mRNA mRNA upstream 105759 5325575 ~ 5332874 (-) False CI01000016_05325805_05330265
CI01000016_05374626_05378364.mRNA mRNA upstream 154029 5373845 ~ 5378673 (-) False CI01000016_05374626_05378364
TU110416 other downstream 284015 4912708 ~ 4923404 (-) True G97040
TU110003 other downstream 1276368 3865761 ~ 3890326 (-) True G96690
TU109910 other downstream 1542106 3635607 ~ 3665313 (-) True G96628
TU108180 other downstream 2221778 2985260 ~ 2985641 (-) True G95070
TU107853 other downstream 2931144 2270836 ~ 2276275 (-) True G94786
TU110385 other upstream 105703 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265
TU110396 other upstream 192443 5415682 ~ 5418217 (-) True G97020
TU110786 other upstream 939170 6158986 ~ 6159721 (-) True G97341
TU112287 other upstream 3669017 8888833 ~ 8894737 (-) True CI01000016_08893013_08893496
TU112294 other upstream 3716973 8936789 ~ 8936818 (-) True G98677

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00020607 True 6406 mRNA 0.43 15 NC_007127.7 12256527 ~ 12266153 (-)
bowfin (Amia calva) AMCG00001991 True 2604 mRNA 0.59 9 PESF01000024.1 284931 ~ 291280 (-)