RNA id: CI01000016_05151082_05166013.mRNA


Basic Information

Item Value
RNA id CI01000016_05151082_05166013.mRNA
length 2866
RNA type mRNA
GC content 0.53
exon number 18
gene id CI01000016_05151082_05166013
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5151057 ~ 5166013 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGCCAGAATGAGTTTTCTCTCCTTTCTCCTCTTTTGCTTGACTTCGGTTGCCCATGGCAACAAAGACGTACGTAGCCCTTTCTATCTATCCTCCGTCGCAGCTGTTGTCAGAGTCGTTCAAAGCGCTCTGATTGTTCCTGTTTCTCTCACACCTGTCCCTTGCTTTTGTTATTGTTCTTTCTCAGCCAATAAACACAAGCCATGGATCGAGACGGAGTACCAAGGGATCGTCATGGAAAACGACAACACTGTCCTCCTCAACCCTCCTCTATTCGCCCTGGATAAAGACGCACCACTGCACTATGCTGGGGAGATCTGTGGGTTTAGGGTTCATAACGGACCAGGTGGTTCTGGTTCGGCACAGTTTGAGGCCGTGGTGTTGGACCGCTCCACTGGAGAAGGTCTGGTTCGGTCCAAGGAGCCTCTGGACTGTGAAAGCCAGAAGGAGCACAGCTTCACCATCCAGGCGTATGACTGCGGTGAAGGTCCTGACGGCAGCAACAGCAAGAAATCCCACAAGGCCACCGTGCACGTCCGTGTAAATGACGTGAACGAGTTCTCTCCTGTCTTTGTGGAGCGTCGGTACGAGGCGTCTGTGCCTGAGGGTCGTCTGTTTGATCGTATTGTGCGGGTGGAAGCCGTGGATGCCGACTGCTCCCCTCAGTACAGCCAGATCTGCTTCTATGACATCATCACACCCAACGTCCCTTTCACCATTGATAATGATGGATGGACAAAGCGCATCGAGTATACTCCTGGTTCCGGCAGTATCCCACTCTTTCCGAACCTGCACTTGGAAACCTGCGAAGAAACAGTTTGGAACATCCAGGCTACTGTTGAGCTTCAGACGGGTCATATTGGGAAGGGCTGTGACAGGGACAGCTACTCCGATCGATCTGTGCGCAGACTCTGTGGTGCTGTGAGGGGTGAAGTCGACCTCCTTCCACCTCCATCCCCTGCAACCAATTGGACCGCCGCACTGCCGACTCTACCATCCTCTGATTCATCCCTGGTCTTCTCCTTCAATGGCTCCACGCATGTTGCTGTAGTACCTGATTCAGTTGCTTCAGCAGTATCCGGTGACCACTTTACCCTGCAGCTGTGGATGCGAAGAGGAGGTGCCAGCGCTCAACCACCGGCCAATCAGGCGAGAGGAACCCGTAAAGAGGAGGAGACTATTGTCTGCAGCACTGTAAAGAATGATGACTCGTACTCACATTACTCTTTATCGGTACATGGCTGTCGTCTCTCTCTCTTCTATTGGCCGGATGTGTCCGCCGCAAGACCCGTCAAATTCCTTTGGAAACTGGAACAGGTGTGTGACAGTGAGTGGCATCACCTGTCCCTTAGTGTGCAGTTCCCCTCTGTCACACTCTATGTGGATGGCGTGACCTTTGACCCTGCACTCATCCATGACAATGGAGCTATCCCCAACCCTGCACCACACCAACGGCTGGTCATCGGAGCATGCTGGGAGCCAGAAGAGAAACCAAAAGACATTGTGAACAACACCATGCCAGAGAGTAAAGACACAGGGAAGTTTGTCAGTGGTTACAAAGGGCTTTTGTCAGGAGTAACGGTGCGTCCAGGAAATGTGGAGCCACACAGTGTAGTGGAGTGCCTGTATGCCTGTCGAGAGGGGCTTGATTTTGGAGACCTTGAGACTTTGGGCTCAGGCATGAAGGTGCATGTGAACCCTAGCCAGTCTGTGCTGGTGTTAGAGGGAGACGACATTGAAAGTTTCAACCGTGCTGTTCAGCAGGTGACATACAGAAACTCTCTACGATTTGCCACCCCTGGTGTCCGTCCGTTAAAACTCACTACCTCTCTCAGGTGTTTCAGTGAAGAGAGCTGTCTCTCTCTCAGGCAGCTGGAGGGTTACCTGGTCGTGCTTCAGCCTGATGCCCCGCAGATCTCTCTGTCTGGGGTGGGACCCCACCTGGCCCGACCAGCCGCTGAATTTGAGGGCCCTCAAGGGGTTCCCTTGTTTCCTGAGCTCCGTATCGTCTGCTCCTTGTCTCACGCTGTGAACACAGCTGCTCAGGGCATGGAAGGAGGAGCACTGATGTCAGATGCTGTTGCTCACACTCTGGATGGGTGTGAAGTCCAGCCCTTGGGGGAGGAGCTAAACCCAGAAAGGGAGGAGCTTCTAGTTGACATGGAGGCGTTAAGAGAGAGGGGGCTGGACATCATTAACACAACGGCCTACATTGCCATCACTGGAGCGGAGTCTATCTCTGTGTATGAAGATGTGTTGCGCTCCATTCGCTATCGCTTAGCAAAGGGCTCTGCTCGTTTTGAAAGAAGGTTCCGTCTGTCGTGCTCAGAAATGAACGGCCGGTACACCAGCAACGAGCTCACGCTTGAGGTGAACTTTCTGCATTCTCTGGACAGTCTGTACCATCCGTCTCACCTGCTGGCGTCTCAGCAGCAGTTCCTCCACCCATCCCATCACACTGGAGAACTGAGTGGACACACACTCCCCAACCCACACCGCAACTCAGTTGTTCCAGGAGCTGCAACTGTCATCATCATGGTGTGTGTGGGTTTCTTGGTTGTCATGGTGATTCTTGGTGTCTTCCGCATCCGTTCCATCCACCGTCGTGGTGAAGGAGCAAGAGGCGGAGGCAAAGAGGGCAGCAACCAATGGGATGATTCGGCCCTCACAATCATTGTGAACCCAATGGAGACATACGAGAACCGCATGGGCATTGCAACAGATATTGAAGGAGAGTGTGATGATGAGGAAGAAGTAGTGGATTCGCCCGATGATACCAGTGATGACCAACGAATCATCATCAAGAAAGAGGGAAGAGACTCCACCCCCAGACGCTACTGATTCAATTGGCCACGCCCACATTAAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110521 lncRNA downstream 27581 5123080 ~ 5123476 (-) True G97135
TU110421 lncRNA downstream 77529 5067684 ~ 5073528 (-) True G97045
TU110413 lncRNA downstream 180277 4969389 ~ 4970780 (-) True G97037
TU110481 lncRNA downstream 183755 4967002 ~ 4967302 (-) True G97101
TU110480 lncRNA downstream 184751 4966094 ~ 4966306 (-) True G97100
TU110525 lncRNA upstream 25013 5191026 ~ 5191428 (-) False G97139
TU110530 lncRNA upstream 25213 5191226 ~ 5191428 (-) True G97139
TU110387 lncRNA upstream 26779 5192792 ~ 5204813 (-) False G97012
TU110388 lncRNA upstream 30385 5196398 ~ 5204813 (-) True G97012
TU110539 lncRNA upstream 175026 5341039 ~ 5341800 (-) True G97148
CI01000016_05131457_05146340.mRNA mRNA downstream 4717 5130748 ~ 5146340 (-) True CI01000016_05131457_05146340
CI01000016_05124385_05128589.mRNA mRNA downstream 22082 5124259 ~ 5128975 (-) True CI01000016_05124385_05128589
CI01000016_05086983_05098757.mRNA mRNA downstream 52300 5086813 ~ 5098757 (-) True CI01000016_05086983_05098757
CI01000016_05057407_05062686.mRNA mRNA downstream 88287 5057226 ~ 5062770 (-) True CI01000016_05057407_05062686
CI01000016_05052905_05056425.mRNA mRNA downstream 94632 5052375 ~ 5056425 (-) True CI01000016_05052905_05056425
CI01000016_05170621_05189845.mRNA mRNA upstream 3701 5169714 ~ 5189845 (-) True CI01000016_05170621_05189845
CI01000016_05205373_05206602.mRNA mRNA upstream 39318 5205331 ~ 5206602 (-) True CI01000016_05205373_05206602
CI01000016_05208242_05218239.mRNA mRNA upstream 41406 5207419 ~ 5219816 (-) True CI01000016_05208242_05218239
CI01000016_05233964_05243756.mRNA mRNA upstream 67643 5233656 ~ 5244368 (-) True CI01000016_05233964_05243756
CI01000016_05249001_05286683.mRNA mRNA upstream 81547 5247560 ~ 5286683 (-) True CI01000016_05249001_05286683
TU110416 other downstream 227653 4912708 ~ 4923404 (-) True G97040
TU110003 other downstream 1220006 3865761 ~ 3890326 (-) True G96690
TU109910 other downstream 1485744 3635607 ~ 3665313 (-) True G96628
TU108180 other downstream 2165416 2985260 ~ 2985641 (-) True G95070
TU107853 other downstream 2874782 2270836 ~ 2276275 (-) True G94786
TU110385 other upstream 159506 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265
TU110396 other upstream 246246 5415682 ~ 5418217 (-) True G97020
TU110786 other upstream 992973 6158986 ~ 6159721 (-) True G97341
TU112287 other upstream 3722820 8888833 ~ 8894737 (-) True CI01000016_08893013_08893496
TU112294 other upstream 3770776 8936789 ~ 8936818 (-) True G98677

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00020600 False 3190 mRNA 0.54 19 NC_007127.7 12106132 ~ 12173647 (-)