RNA id: TU110571


Basic Information

Item Value
RNA id TU110571
length 620
lncRNA type intronic
GC content 0.39
exon number 2
gene id G97180
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5553295 ~ 5553986 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTAATGCTGCTTTGTAAAGTATCTTGGTCAAGCTATGTTTATGGGGGTGGAAGGGGGACTATCCTGCCCCCTCAGTCAAGATGAATGTGAAAATAGATTTTAATCATGAAATATAATCAACAGACTATTTTAAAAATCACAATTGCCATGTGCATAGGCTTTCTAACATTAAAGGGTTAGTTCACCCAAAAATGAAAATTCTGTCATTAATTACTCACCCTTGTGCCGTTTTACACCCTTAAGACCTTCGATGATCTTCGGAACACAAATTAAGATATTTTTGTTTAAATCCGATGACTCAGTGAGGCCTACATAGGGAGCAATGACATTTCCTCTCTCAAGATCCATTAATGTACTAAAAACATATTTAAATCAGTCCATGTGAGTACAGTGGTTCAATATTAATATTATAAAGCGACGAGAATATTTTTGGAGCGTAATGAATCAGCGTGTCGAATCATGATTCGGATCGTGTGTCAAACCGCCAAACTGCTGAAATCACGTGACTTTGGCGCTCCGAACTGCGGATTCGACACGCTGTCACCGGCTCTGTATTTGTGGTGCTGGTGTATTTGGATATGTCTGTACTAGCTTTGCACACCTAGATTGGCGAATATTTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110556 lncRNA downstream 141375 5411655 ~ 5411920 (-) True G97165
TU110551 lncRNA downstream 150926 5402143 ~ 5402369 (-) True G97160
TU110408 lncRNA downstream 166830 5345401 ~ 5349517 (-) True G97032
TU110539 lncRNA downstream 211495 5341039 ~ 5341800 (-) True G97148
TU110387 lncRNA downstream 348482 5192792 ~ 5204813 (-) False G97012
TU110640 lncRNA upstream 11211 5565197 ~ 5566153 (-) True G97203
TU110652 lncRNA upstream 12307 5566293 ~ 5573569 (-) True G97215
TU110689 lncRNA upstream 223418 5777404 ~ 5777668 (-) True G97252
TU110692 lncRNA upstream 280584 5834570 ~ 5834911 (-) True G97255
TU110595 lncRNA upstream 327391 5881377 ~ 5886137 (-) False G97185
CI01000016_05508930_05523828.mRNA mRNA downstream 29467 5508087 ~ 5523828 (-) True CI01000016_05508930_05523828
CI01000016_05468882_05473383.mRNA mRNA downstream 79912 5468763 ~ 5473383 (-) True CI01000016_05468882_05473383
CI01000016_05461674_05464777.mRNA mRNA downstream 88518 5461674 ~ 5464777 (-) True CI01000016_05461674_05464777
CI01000016_05426889_05429942.mRNA mRNA downstream 123353 5425776 ~ 5429942 (-) True CI01000016_05426889_05429942
CI01000016_05412782_05415867.mRNA mRNA downstream 137428 5412248 ~ 5415867 (-) False CI01000016_05412782_05415867
CI01000016_05565004_05596591.mRNA mRNA upstream 10982 5564968 ~ 5596591 (-) True CI01000016_05565004_05596591
CI01000016_05615909_05656109.mRNA mRNA upstream 60781 5614767 ~ 5656109 (-) True CI01000016_05615909_05656109
CI01000016_05734861_05742853.mRNA mRNA upstream 180576 5734562 ~ 5742853 (-) True CI01000016_05734861_05742853
CI01000016_05759240_05762146.mRNA mRNA upstream 204998 5758984 ~ 5763974 (-) True CI01000016_05759240_05762146
CI01000016_05765402_05775268.mRNA mRNA upstream 210790 5764776 ~ 5775297 (-) True CI01000016_05765402_05775268
TU110396 other downstream 135078 5415682 ~ 5418217 (-) True G97020
TU110385 other downstream 222449 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265
TU110416 other downstream 629891 4912708 ~ 4923404 (-) True G97040
TU110003 other downstream 1622244 3865761 ~ 3890326 (-) True G96690
TU109910 other downstream 1887982 3635607 ~ 3665313 (-) True G96628
TU110786 other upstream 605000 6158986 ~ 6159721 (-) True G97341
TU112287 other upstream 3334847 8888833 ~ 8894737 (-) True CI01000016_08893013_08893496
TU112294 other upstream 3382803 8936789 ~ 8936818 (-) True G98677
TU112296 other upstream 3681010 9234996 ~ 9239929 (-) True G98679
TU112308 other upstream 3702116 9256102 ~ 9257611 (-) True G98691

Expression Profile