CI01000016_05734861_05742853


Basic Information

Item Value
gene id CI01000016_05734861_05742853
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5734562 ~ 5742853 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_05734861_05742853.mRNA
TTGAGAATACAAAACCGCAGACAGCAGAATGAACTTAATGCAGAGTCTGGTACAAAGGCCTCTGTCCCTGATAAAGTTGGGGAGAAAGAAGTCAGCAGTGGTTTGCGTCAGACAGAAGATGGTGCCACTCAGAAGTCGCCCCCTAGTGGTCTGACTGCTCAAACTGCACCAGACAAGAGTTATAGTGGAGCTCACAGGCAGAAGAAGGCTCGTCTGGCTGAGGATCTTAGTGAGAAAATTCAGAGTCGGCCTGGACCACTTGAACTCCTGCAGAGGCATATTCTGCCTCTAGAGAACACTGCTTCATTGCCATCAGATGTCTTTGAAGATGACAACTCCTCTTCTGCCTCTGCATCTCCCGAGCAACTTGGGATGCACCAATCTCCAGGCTTCTCATCATCACCTGGGCAAGGAGGTGACCAATCACCAAGTGATGCGTCACCTATTGCTACACCCATCAGCCCAAACAATGTACAGTGCAGATTGGCGTTGCTCCCGGCAACCGAGTGCATCAGCCAACCAATGACCATGACAGTAACGGGGTCAAACTCCATATCAACAACTGGGAGACCCAAAGGGATGTACATGCCCTCCCAGACACCACCACTGCTGCCAAAGACAGCACAACCTCCAGCTCCATCTTCTCATTCCATACTGGGTGGGTCCTTAACTTCATCCCGCCCTCCACGGCCACGAAAGCCTCGCGATTCCAAACCTAAAATGAGGAAGCTGAAATACCATCAGTACATTCCCCCAGATCAAAGGACTGGGACTGGAAGCGGAGCCGGAAATGCTTCGCAAAAGAATAACAACAGTCAGGCTCCAACCACTGATTCCTCTTACTCCCACCTCTTGCAACAACAGCAGGTGTTCTTACAACTACAAATTCTTAACCAGCAACAACAGCTCCCTGTGACAAACAGTGAGAACCATTTGAAGATTTCCGGAACTACACCTCAAAGTTCCCCTCAGTCTGGAACCCCTTCAACAAACCCCTCTACTCCTGATTCAAGTCCCATCCACCAGGCAGAGTTACTCCCCTCAAACCTTGATGACCTAACGGTCTCAGTTCTTCGTCAGCAGTTGCGGAAACGTGGACTCCCAGTTTCCGGCACTAAGCCAGCACTCCTCGAGAGACTCCGTCCTTTCCAGATGCCTCGTCCCCCGTTAACCCCTGCTCCACTTTGCCAGCTAGGGGCCACACTAGAACCCTCCCACCCTGCTGGCCTCAACCAAATCCCTACCAGTGTAGACAATGCCAAGTCTGCTCCAATGTACATCCACCCTTCAGGTTTAGCAGAGCAAAGCTTAACCGGTGATAGTTACCTCACTTCTTCTTCGGCTGGCTCCAGTCCCACCTTACATGCATCCCCTCCTCCAATGCCCTCTGGCGCCACGTGGAGGCCAGGCCAGGCAGTAGATGAACTTAGTGTGGAGCTGGAAATGAGAGAGAGGATGAGGAGTAGACCCAGAGAAGGAACAAAGGACACTCAGCTGTGCGGAAGTTCCCTTCATCCGTTCCTGCAACAGGAGCCAGGATGCACCAGAGGGAAACCAGACACAGGCGGGCAGGAACTGCTCTTTACGTATTGCACTGGTGAAGGAAAAGTGAACTGCTGTCAGCTTTGTGATGCAATTGGTCAAGACTTTGATTTGCCAATGCAAATCACTGCCAGTCCAGCACAGGCATCGCCCACTGTCCGGAGTTTGGAAGAGGAACTACAGGAGGCTATTCAAAGAGTGCAGATGGACCCTAATCAATCCATAGATGACATTTTGGACGAGACTATTGGTTGTTCAGATAACTCCTCACTCATCACAGACGTCCAATCAGCCACTACCATCCTCTCAGGCTCCTCCCCTGCACCGCAGCCTGAACAATCACAACTCACCAAGCGCCAAAAAGAAGACAACTTTCTTTCCTCTCCTCTGTGCTCTTCGCTTCTTTTAGAGCTTCCTCCCTCACCTAACAACGCTCTACCCCTTGGTTCAACCCCAACTCTACTTCCTCCTCCCCCCATCTGCACCACTCCACCATCCAGCTCACTGTCCAGGAAAAGAAGGTCAGAGGTTCTTGTTTTTGATCCTGCTGATTGGCTGGAGACCTTGACCTCTGGCCTGCACCCGCTAACGCCCCCCGCCGCCCCATTTTTAGAAAGTGATTTTGGCCTTGACTCAGACCTGAACGTCAACAGGGTTCTTGACCTGATGGTGGAGCAATGCGCCAGACAAACTGTCGGCATGTGGCAACTGCGTGGAGCAGCGGGAGCTTTAAACAATCTGTGTGTATTTACAGGGAAGTGTATGCGCTCCCTGTATGTGTGAGCACGCTTCTCTTGGCTGCTTTATCTGCGTGTGTGTGTGTGTTTGTGTTGGCACATACACACTTGCCAGCATGTTCTGTATCTACAATTTCAATGCAACATAAATGAGGTGCCTAAAGCATCCAAATGCACTTGTGTCTGTTTATACTGGTGTACATTTTTCCATTTAGTATCAAGTTATTATCTGCTTTGTCTAGTGCATTATGGGACTAATGTTATCCCAAAAACATATGGCCTAACAAAAGATCCTCTGAAGATTTTAGGACAGAATAACTCAAGCTACCTTTAGGCACCAATAAA

Function

GO:      GO:0001105, GO:0005634, GO:0051145

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_05734861_05742853.mRNA True 2624 mRNA 0.50 14 5734562 5742853

Neighbor

gene id symbol gene type direction distance location
CI01000016_05615909_05656109 GRIN2D coding downstream 78453 5614767 ~ 5656109 (-)
CI01000016_05565004_05596591 PRKCG coding downstream 137971 5564968 ~ 5596591 (-)
CI01000016_05547222_05557502 CACNG7 coding downstream 177060 5547039 ~ 5557502 (-)
CI01000016_05508930_05523828 CACNG8B coding downstream 210734 5508087 ~ 5523828 (-)
CI01000016_05468882_05473383 ISOC2 coding downstream 261179 5468763 ~ 5473383 (-)
CI01000016_05759240_05762146 NA coding upstream 16131 5758984 ~ 5763974 (-)
CI01000016_05765402_05775268 NTD5 coding upstream 21923 5764776 ~ 5775297 (-)
CI01000016_05781693_05789936 DBPB coding upstream 38336 5781189 ~ 5790363 (-)
CI01000016_05793987_05797545 NA coding upstream 51120 5793973 ~ 5797545 (-)
CI01000016_05804456_05811231 SHISA7 coding upstream 60275 5803128 ~ 5811231 (-)
G97215 NA non-coding downstream 160993 5566293 ~ 5573569 (-)
G97203 NA non-coding downstream 168409 5565197 ~ 5566153 (-)
G97180 NA non-coding downstream 180576 5553295 ~ 5553986 (-)
G97165 NA non-coding downstream 322642 5411655 ~ 5411920 (-)
G97160 NA non-coding downstream 332193 5402143 ~ 5402369 (-)
G97252 NA non-coding upstream 34551 5777404 ~ 5777668 (-)
G97255 NA non-coding upstream 91717 5834570 ~ 5834911 (-)
G97185 NA non-coding upstream 138524 5881377 ~ 5887097 (-)
G97188 NA non-coding upstream 144828 5887681 ~ 5923379 (-)
G97191 NA non-coding upstream 151801 5894654 ~ 5908304 (-)
CI01000016_05412782_05415867 NA other downstream 316345 5412248 ~ 5415906 (-)
CI01000016_05325805_05330265 COX6B2 other downstream 403716 5325519 ~ 5332874 (-)
CI01000016_04921091_04922518 NA other downstream 811158 4918975 ~ 4922518 (-)
CI01000016_03921124_03930996 NA other downstream 1803511 3920055 ~ 3931162 (-)
CI01000016_03647744_03675574 NA other downstream 2069249 3647653 ~ 3675585 (-)
G97341 NA other upstream 416133 6158986 ~ 6159721 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 other upstream 3145980 8888833 ~ 8894737 (-)
CI01000016_08926089_08945071 NA other upstream 3193936 8925960 ~ 8945229 (-)
G98679 NA other upstream 3492143 9234996 ~ 9239929 (-)
G98691 NA other upstream 3513249 9256102 ~ 9257611 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010518 si:dkeyp-69b9.3 coding NC_007127.7 CM002900.2 13505064 ~ 13516745 (-)