CI01000016_05508930_05523828 (CACNG8B)


Basic Information

Item Value
gene id CI01000016_05508930_05523828
gene name CACNG8B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5508087 ~ 5523828 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_05508930_05523828.mRNA
GCATGGTGTGTGAGAAGGGCATTCAGATCCTTCTCACCATCGTGGGTGCTTTCGCATCCTTTGGCCTGATGACGGTGGCTATCGGCACGGATTATTGGCTATACTCGCGGGCGCTCATCTGCAACAGCACCACCAACTCCACACAAGAGGATCCCCATAATAAAGACAAGAAGGACCCCGGGGCCTTGACGCACTCGGGCCTGTGGAGGATCTGTTGTCTGGAGGGGATGAAGCGTGGCGTGTGCTCCCAGATCAACCACTTCCCAGAGGACGCTGACTTTGATCATGATGGAGCAGAATACGTCCTGCGTAAGAGGCTGCCTTTTATTATTACAACAACAGAGTTTATCATGACAAAGCAGTTCTGCAGCATGAATGGAATTCAGCAACAGCAATGGCTTTGCACTGTTAAAGGAACAGTTCACCCCAAAATAAAAAATGGAGTGGTCCGGGCCTCCAACATCTTTCCCATTCTTAGTGCAATCCTGCTGCTAATGGGAGGGGTCTGTATCGCAGCCAGTCGTTTCTACAAGAGCAAAAGGAATATCGTGCTGGGAGCTGGCATTCTGTTTGTAGCAGCAGGCCTGAGTAACATCATTGGCGTGATAGTGTACATTTCTGCTGCTCTGGGTGACATTTCCCCAAAGAAGGACGAGGATAAGAAATGGCAGTACTCCTACGGCTGGTCCTTCTACTTTGGTGGGCTGTCCTTCATCCTGGCTGAGATGGTGGGTGTGCTGGCAGTAAACATCTACATCGAGAAGAACAAGGAGCTCCGCTGTCGCTCTCGCACCGATATCTTTAAGAGCACCACTCACGCCATGCTACGGCTCCCGAGCTACCGCTTCCGGCGCAGATCGCGTTCCAGCTCTCGATCCACCGACCCCTCACGCTCTCGAGACCCGTCCCCCGTGGGTGGTCCTCCAGGGGGTAAGAACTTCGGAATGCCCCCGTCAGCTCTACTCTCCCAGGGGCCCATCTCGGTTTCCACTCTACCCAACCCCCACTCCCGCTCCGCTCTGCCAGGGGGCGATATTTCCCTTTACACCCTCTCCCGAGACCCCAAACTGGGTGGTTTAGGAGGGCTGGGCGCCCCTCCGCTGTACGGCACGGTGGACCGTGCCACACTATACCAGCTGCACAACTGCTTCCCTAAAGAGAGCGGAGGGGGAATGATGATGAGTGGGACGCTGCCCTCTCTCAAATCTCACAATCCGTCAGTGGTCCAGAATTCTTCCAACTCCAATGCTCCGCTCAGTAACTCCGTCCCATCCTCCCAGCCTCCACCTTTCTCCTCCTCTACAGTGGAGAGGGAACGAGGGATGGGAACGCTGGATAGGCTAGGGAAAGGTGACAGAGAGAGTAACTCCAACACGCTAAATAGGAAAACTACACCAGTCTAGACAGATCGAGGGTTGGAGTAGTTGATAAAGTGCGAGAGATAATGTAGACGGAAAGACTGGAAAACAACTAAAAAAAGGGAATAACTCTCTCGGTATTGACAAATGTTTCACTTTATGAAAAAAAATATAGAGTAAAAGAATGACAAACATCTCATAATAACAACAACAATCATGTTTTTTCAGTACTGTTTTATAACATGTTTATTCTTAATGAAACTATAATCATGGGATACTGTGATGTTTATTATTTTGCTTGATTTTAAAGACGTGGAATTTAAAGATGAAGACAAAGTGTTGTTGTTATTATGAGTAAGTTTGAACTGCTAGCTCTTAACATTGTTAAATGATTCTAGTTTTTGAACTAGAAAGACAAGATTTTGACTGTGATTCAAAAATGTGATACTGAGCACTGCAGAAACATGAGTGTATTGTGAGAATGAGATTATTATTATTACAACTAACTTTGTGAGAAGCATTTTATTTATTTTAATGAAAGTTTTATTTTCTACCCTTTGATAACACGCAATTTAGTGTGTAATATCTGTATATCTGTCTTCCAGCTCAGTAAACAGATCAGCACCATAATTGATGGACTGAAACGACAGAGTTCAAATGAAAAAGATTTTTATATAAACCTACCATCATATTATTTTTGTTAAATCACTGTTAGCAGTAGAAGTAGCACTTGTTGAATTGAAAACCTTTGTTTTGGGGCATTAAAACATTCCCTCACTTGGTCAAAGAGGGACAGATGATATATTTGTATAGAGAAAATGGTGATTGACATTCAGAAATGGGACTTCTATCCAAAACTGTGCTTTTCAAATGGGCGGGGACAATAAA

Function

symbol description
cacng8b Predicted to enable channel regulator activity and voltage-gated calcium channel activity. Predicted to be involved in several processes, including neurotransmitter receptor internalization; neurotransmitter receptor transport, postsynaptic endosome to lysosome; and postsynaptic neurotransmitter receptor diffusion trapping. Predicted to act upstream of or within calcium ion transmembrane transport and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in postsynaptic density membrane. Orthologous to human CACNG8 (calcium voltage-gated channel auxiliary subunit gamma 8).

GO:

id name namespace
GO:0019226 transmission of nerve impulse biological_process

KEGG:

id description
K04873 CACNG8; voltage-dependent calcium channel gamma-8

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_05508930_05523828.mRNA True 2246 mRNA 0.46 4 5508087 5523828

Neighbor

gene id symbol gene type direction distance location
CI01000016_05468882_05473383 ISOC2 coding downstream 34704 5468763 ~ 5473383 (-)
CI01000016_05461674_05464777 FOXJ2 coding downstream 43310 5461674 ~ 5464777 (-)
CI01000016_05426889_05429942 NA coding downstream 78145 5425776 ~ 5429942 (-)
CI01000016_05412782_05415867 NA coding downstream 92220 5412248 ~ 5415906 (-)
CI01000016_05374626_05378364 NA coding downstream 129414 5373845 ~ 5386465 (-)
CI01000016_05547222_05557502 CACNG7 coding upstream 23211 5547039 ~ 5557502 (-)
CI01000016_05565004_05596591 PRKCG coding upstream 41140 5564968 ~ 5596591 (-)
CI01000016_05615909_05656109 GRIN2D coding upstream 90939 5614767 ~ 5656109 (-)
CI01000016_05734861_05742853 NA coding upstream 210734 5734562 ~ 5742853 (-)
CI01000016_05759240_05762146 NA coding upstream 235156 5758984 ~ 5763974 (-)
G97165 NA non-coding downstream 96167 5411655 ~ 5411920 (-)
G97160 NA non-coding downstream 105718 5402143 ~ 5402369 (-)
G97148 NA non-coding downstream 166287 5341039 ~ 5341800 (-)
G97012 NA non-coding downstream 303274 5192792 ~ 5204813 (-)
G97180 NA non-coding upstream 29467 5553295 ~ 5553986 (-)
G97203 NA non-coding upstream 41369 5565197 ~ 5566153 (-)
G97215 NA non-coding upstream 42465 5566293 ~ 5573569 (-)
G97252 NA non-coding upstream 253576 5777404 ~ 5777668 (-)
G97255 NA non-coding upstream 310742 5834570 ~ 5834911 (-)
CI01000016_05325805_05330265 COX6B2 other downstream 177241 5325519 ~ 5332874 (-)
CI01000016_04921091_04922518 NA other downstream 584683 4918975 ~ 4922518 (-)
CI01000016_03921124_03930996 NA other downstream 1577036 3920055 ~ 3931162 (-)
CI01000016_03647744_03675574 NA other downstream 1842774 3647653 ~ 3675585 (-)
G97341 NA other upstream 635158 6158986 ~ 6159721 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 other upstream 3365005 8888833 ~ 8894737 (-)
CI01000016_08926089_08945071 NA other upstream 3412961 8925960 ~ 8945229 (-)
G98679 NA other upstream 3711168 9234996 ~ 9239929 (-)
G98691 NA other upstream 3732274 9256102 ~ 9257611 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location