CI01000016_05565004_05596591 (PRKCG)


Basic Information

Item Value
gene id CI01000016_05565004_05596591
gene name PRKCG
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5564968 ~ 5596591 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_05565004_05596591.mRNA
GAATACTGATTTTCCTGTCTCATTCTCAGCGGTTCACTGGAACAGCCGTGAAGGCCTCAAAGTGCTTATGGGAATTGGAAAGCAAGGATTCCAGTGTCAAGGGGGGCCAAACATTAAAGTGTAGGCCTCTTCCATGTCCCTCTCAATGTCTATGGTGGGCATGTGAAGATCAGAAAAGTGGTTTGCTGAAGCAACTCTTATTTGACAAAAGTTTCGTGGTGCACAAACGCTGCCATGAGTTCGTCACTTTTACTTGTCCAGGAGCCATCACTGCTCCCAAAGCTGAGGACCTCAAGAGCAAACACAAGTTTAAAGTACATACATACGCCAGTCCCACCTTCTGTGATCACTGTGGGTCTCTGCTCTACGGCCTCATACATCAGGGCATGAAATGTGCCAGTTGTGACATGAATGTACACAAGCGTTGTGAGAGCAGCGTCCCCAGCTTGTGCGGACAGGACCACACTGAGAAAAGGGGGCGGATTCGTCTGACCGTGCGTGGAGAGAAGGAAGACATATATGTCACAGTGCATGAGGCACGTAACCTGATACCCATGGACCCTAACGGCCTATCGGATCCTTATGTGAAGCTCAAACTCATCCCTGATCCAAAGAGCCAGAGCAAACAGAAAACCAAAACCATCCGTTCTACACTCAACCCCATCTTCAATGAGAGCTTCACCTTTTCAGTGCGTGGGAGGCAGTGGGACAGGCGTTTGTCTGTAGAGGTCTGGGACTGGGATCGGACCTCAAGGAATGACTTCATGGGCGCTCTGTCGTTCGGCGTTAGTGAGATATTCAGACGTTCCGTCAGCGGCTGGTTCAAACTACTCAACCAGGATGAGGGAGAGTATTATAACATCCCTGTACCCGACCCAGACCTGCAGGTACCAGATGCTGCTATCCCACCCTCTATTCCTCCTGCTACTGTTACCGTGACAACGCCTGTTCCTGCTGTGACCCCGCCTGCTCTGAGTCCGACTCCCACTGTACTGCACACGGGCAAAGGCCAAGTCGGACTGCACGATTTCAACTTCCTCATGGTTCTGGGCAAAGGGAGTTTTGGCAAGGTTCTGTTGGCAGAGGAGAGGGGCAGTGAGCGCTTGTTTGCGGTGAAGGTGTTGAAGAAAGATGTGCTGTTTCAGGATGAGGACACGGAGAGCGCCATGGTGGAGAGAAGAGTGCTGGGCCTTGCCGGGCGACCTCACTTCCTGACATCCCTCTACTGCGCCTTTCAGACCGAGGATCGTCTGTATTATGTCATGGAATATGTGAATGGTGGTGATCTTATGTTTCACATCCAAATTGTTGGCAAGTTTAAAGAACCACATGCAGCTGGCAGAATGTGTTTAATGGCATTAATGAGAGATTTTCATGTTGGCAGGTTCTATGCAGCTGAGATAGCGGTGGGTCTGTTCTTCCTGCACAACAAAGGCATCATATACAGAGATCTAAAGCTGGACAATGTCCTGCTGGACAGTGAAGGACACATAAAGATAGCAGACTTTGGGATGTGTAGGGAAGGCATGATGGAAGGGGACACCACTCGCACCTTCTGTGGCACACCCGATTACATCGCACCTGAGATTGTGGCGTATCAGCCGTATGGTAAAGCAGTGGACTGGTGGTCGTATGGAGTCCTCCTTTATGAGATGCTGGCTGGGCAGCCTCCTTTTGATGGCATAGATGAGGAGGAGCTGTTTCAGTCCATCATGGAACAGAGCGTTTCATATCCTAAGAGTCTCTCTCGGGAGGCTGTGGCCATCTGCAAAGGGCTCCTCACCAAGAACCCTGCTAAGCGTTTGGGTGGAGGAGAGGATGCAGAGACAGAGCTGCGGGAGCATCCTTTTTTCCGCTGGATAGACTGGGACCGGCTGGAGAGACTGGAGATACAGCCTCCCTTCAAACCCAGAAGTGTCAGTATCAACTATCGCAACACTTGTCTCTGTGTGTGGTCACCCATTTGGCCTCGTCTCACTGGTCATGTCTCCTGCGTCTGTGTTGGTGCTGATGAGACGGCAGACCTTTACACGTCTCTCAATCTCAACACTTTCTCTCTCCACTCATCGCTCCCTCAGTGTCGTCCCAGTGGGCTTGAGTGATATAACAGGATACCCTTAGATACCCTGCCTATTAAA

Function

symbol description
prkcg Predicted to enable protein serine/threonine kinase activity. Acts upstream of or within receptor recycling and synapse maturation. Predicted to be located in cytoplasm and membrane. Is expressed in brain; neurons; and spinal cord. Human ortholog(s) of this gene implicated in spinocerebellar ataxia type 14. Orthologous to human PRKCG (protein kinase C gamma).

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process

KEGG:

id description
K19663 PRKCG; classical protein kinase C gamma type

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_05565004_05596591.mRNA True 2138 mRNA 0.51 17 5564968 5596591

Neighbor

gene id symbol gene type direction distance location
CI01000016_05547222_05557502 CACNG7 coding downstream 7466 5547039 ~ 5557502 (-)
CI01000016_05508930_05523828 CACNG8B coding downstream 41140 5508087 ~ 5523828 (-)
CI01000016_05468882_05473383 ISOC2 coding downstream 91585 5468763 ~ 5473383 (-)
CI01000016_05461674_05464777 FOXJ2 coding downstream 100191 5461674 ~ 5464777 (-)
CI01000016_05426889_05429942 NA coding downstream 135026 5425776 ~ 5429942 (-)
CI01000016_05615909_05656109 GRIN2D coding upstream 18176 5614767 ~ 5656109 (-)
CI01000016_05734861_05742853 NA coding upstream 137971 5734562 ~ 5742853 (-)
CI01000016_05759240_05762146 NA coding upstream 162393 5758984 ~ 5763974 (-)
CI01000016_05765402_05775268 NTD5 coding upstream 168185 5764776 ~ 5775297 (-)
CI01000016_05781693_05789936 DBPB coding upstream 184598 5781189 ~ 5790363 (-)
G97180 NA non-coding downstream 10982 5553295 ~ 5553986 (-)
G97165 NA non-coding downstream 153048 5411655 ~ 5411920 (-)
G97160 NA non-coding downstream 162599 5402143 ~ 5402369 (-)
CI01000016_05374626_05378364 NA non-coding downstream 178503 5373845 ~ 5386465 (-)
G97148 NA non-coding downstream 223168 5341039 ~ 5341800 (-)
G97252 NA non-coding upstream 180813 5777404 ~ 5777668 (-)
G97255 NA non-coding upstream 237979 5834570 ~ 5834911 (-)
G97185 NA non-coding upstream 284786 5881377 ~ 5887097 (-)
G97188 NA non-coding upstream 291090 5887681 ~ 5923379 (-)
G97191 NA non-coding upstream 298063 5894654 ~ 5908304 (-)
CI01000016_05412782_05415867 NA other downstream 146751 5412248 ~ 5415906 (-)
CI01000016_05325805_05330265 COX6B2 other downstream 234122 5325519 ~ 5332874 (-)
CI01000016_04921091_04922518 NA other downstream 641564 4918975 ~ 4922518 (-)
CI01000016_03921124_03930996 NA other downstream 1633917 3920055 ~ 3931162 (-)
CI01000016_03647744_03675574 NA other downstream 1899655 3647653 ~ 3675585 (-)
G97341 NA other upstream 562395 6158986 ~ 6159721 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 other upstream 3292242 8888833 ~ 8894737 (-)
CI01000016_08926089_08945071 NA other upstream 3340198 8925960 ~ 8945229 (-)
G98679 NA other upstream 3638405 9234996 ~ 9239929 (-)
G98691 NA other upstream 3659511 9256102 ~ 9257611 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010515 prkcg coding NC_007127.7 CM002900.2 13020776 ~ 13109749 (-)