CI01000016_05804456_05811231 (SHISA7)


Basic Information

Item Value
gene id CI01000016_05804456_05811231
gene name SHISA7
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5803128 ~ 5811231 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_05804456_05811231.mRNA
ATGATGCCCACCTTGGAAGCTCGAGTACGTGTCATCATTCTCTTCCTGCTAATCGCTGTCCCACTTAACGTTTCCTCTGCGAGCGTCCCGGGCCCCTCCAGAAACGGAGCAAATGGGCCCATCACCATCACCCCGACGCCCAACCCCAGATCTCAGGGTAGGGGCTTTCTTCACCCCCTTTCTAAAAGCGGTGGGAGTATGCGAGGGAAGTCCATGAATCGTCGGCCAAAGCAGCCAGCTGGAGTGGCAGAAATGCCCCTCGGGCCGTTGCCTCAGACAATGCTGCCAAAGAATGTAACGACTGATGCAATGAAGGCCCCTTTTGGAAAAGCGCTTGTAGCTCCGCCTTCTCGCAAACTGGTGGAAGTGGACGTGTGTCGAGGTTATTATGATGTCATGGGGCAGTATGACCTCACCTTTAACTGCTCCAAGGATGACTTCATCTACTGCTGTGGCACCTGCCATTATCGATTTTGTTGTCCGGACCGCACTCGAAGGCTGGACCAGAACATTTGCCACAACTACCATTCCCCTGTGTGGGCCAATACAGCCCCCCCTGCGACCAGGCCGTCACAGCCTTCCCATCCGGACCTCAGCCGCATCGAACAGAGCAACAACACCATCTATGTCATCGGTGGAGTCATCTCGTTTACTGTGGCAGTGGCAGTGGCCATTAAAGTGGCGTTCCACAAGGCATCACGGCAGCCTAGGAACAGAGAACTCAACATGCCCAGGGCTCTTGTGGAAATGTTGCGTCACCAGTCGAGTCCAGTTCAAGAGGGAGAGAGAAACAACAGCGTAGCCTTGGGAACTGGAGGAGGAGAGGGGACACTTGGACGACCCCCGAAAAATCTATATCCCACACTACAGAGAGAGAAAGATAACAGATTGGGGAATCTACAGCATAACTTCATCCATACCACAGGCTCCAGTCCCAAACATACAGCCACCATCGAGCGTGGAGCACGTATGAACAACATGCAGATGGTCGCCGGAGGCACATTGAAGCCCAGTAAGCATACTAACGCCATGAAGCCCCAGCCGTCCTTCCATCACTCCCTACATAACCTGGCTCAGCTGCCACCCTCGTATGAAGCCGCCATGAAGCCTGAGATCAACAGATACTCATCTCTTAAGCGTCTGGAGAAAGGAGGATTGGAGGAATATTCAGGTTACTGTACCACCAAACGGAGGCCCAACAACGCCCCTCCCGCCTTTCATTCCTCCCAGCATCACCTTCCCTGGGGTGGCGACTACACAATGGGGGGAAGAGGCACGCTTCCCACCCATGCCACTCGTCCTCGAATACCTCATCCGCAGTCTGCCCCAAGCCACACCCCGAATCCTTACCCTCTGGAACCTCCGGAAACAAAGCAAAACCAGAATTACGATACGCTTTCTAAACCGCCACGCCGCGTCAAGTCGACGGACCAGCTCCTTGCCCTTGCCGATGGCAACACCTTATCAAGGCTCTCGAAGAACCAGCAGCACCAATACTACAAAGCCATGGCCAGTGCATCAAAGAACTCCAATAACCAGAACACCCTGAAGAAGTCCAAGGAGAGGCTGCTGATGTCACCAGATCATCTAGAGGAGGAGGTAAGCGGGGTTGAGTATGGCGGAAGCGGGATGGGTATGGGAATGGGCGACTACACGGGCGGAGGGGGAGGAGGAATGGTGCCCACCCTGCCCCGCGTCAGCCACCAGAAAGCTCAATCGCAGCAGAATGTTTGCGCCACGCCGTCACTCGACCGTCACCACATGATCAAGATGAACTCGCACCCGACGTCGGGGCGAGAGCAAGAGCGGAATTCGGCGGCGATGTCAGGTCACCTGGGAGGAGGCGGGGGCGGAGGAGTGGCATGGGGCGACATGCCAGGAACAGGAGTTGTCATGGGAACAGGGACTCTTGGTGGACACAGTGCCAGGAGGCTTGCATTTGCAGCTAAAAGGCAAAATACCATTGAACAACTTCACTTCATCCCTGGTGGAGGGGGAAGTGGAGGAGGAGTGGCATCCAACCAAGGGGTTAGAACAGGAAGCAAGAATGAGGTTACTGTGTGAGCAAAAGATGGGTGAAGGATAGACTGTGTGAGAAGTTGGTGGATGGTAGAGGGACTGTAGGAGAGAGAGAGTGGGCGGAAGAGGGAGAGAAATAACGAGAGAAGAGAGAAAAGGAGTAGGAGGATGGTAAAGGAATCAGAGAAACAGATTTTGAAGTAGGGGGCCACGAAGTGGGAGAAACTACACAGAAAGCGATGTGGCACCTTTTACATATATATATTGTATATAGTGGCAAATTCACAACATAAGATTAGATAACAACAGTTATAAGTCAGGTTTGATAGAGCTTCAAAGTTTTTTGTGCTTTTTATGTTAATGAAATTGCCGCTATAATTATGATCAAAGCTGCCATATACAACTATTTATTTGTGTAAATTTTGCCTATAAATCTACCGCATAGAATATCAATAGAGTGTAATATAAATTCCACATGATGTGGACATTTTTCATATCTTTATGTCATGTTTTTATCCTCAGATATCTTACATTATTACACATTACAGATATAGCTGCTATGGAGCCATATATTTCAGAGAACGGCTTTTATCTTATAACTATGATTGAACGACTGGGAGACTAATAATTAACATCTGCATAAGAGGAACCAGATGAACATGGAGCGCTCATCCCAACTGACGAATTGCAAAGCTACTTACAGTTGGACAAACGTAATGCTGGATCTTATCTCTTTTTAAACCCTAATCCACGTCGTCATAATGAGGAAGTGCGGCAGGGTTTTTACAACGTATGTCAAAAGGAATGATGATGGAACAATAGGAGGAGCATATCCAGAAACTCTTAAGAATTTAATGAACTCATTTTGAATACAGTGAGACAGAGAAAGTAAGCCTTACCATACATTGTTTCGCCTGCATCTTATTCAGTGTGAATTTAATATGGATGTACCAATTGAGTTTCTGTTCAAATTGTTTTGGTGGAATCCTGAAAATAGTACACAAGGAGTTTTAAATCCTCAAGTTTGCCCTTCAGTACATAACTGGAGATCGCTTCGAACTATCGATGAAAGCCATTCTGGGACACAATTGGGCATAAAAGCCCAGACGAAAACCAAGAGAAATGTCTGACAATCATCTTTTTTCTCCATCTTAAAATGACTCATTAATGATCAATGGCACTTTGTTTGGATTCTGAGCCACCACTTTCTACAACGTCCAAGTGCTGGGATTTGCAAGGGAGGTTCATCGTGAGGGACGCTGGTCTACCAAAAGCACAAGAATACATTAGATTTCTGTAATGCTGGGTACATACACGTTTATGCTTCTCTTAGGTATACTGTGTAGACAAACGGTTCACCTTAAGCTATTAAA

Function

symbol description
shisa7 Predicted to enable GABA receptor binding activity and ionotropic glutamate receptor binding activity. Predicted to be involved in several processes, including gamma-aminobutyric acid receptor clustering; regulation of signaling receptor activity; and regulation of synaptic plasticity. Predicted to be located in asymmetric, glutamatergic, excitatory synapse. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in glutamatergic synapse; postsynaptic density; and synaptic membrane. Predicted to be integral component of postsynaptic specialization membrane.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_05804456_05811231.mRNA True 3392 mRNA 0.48 5 5803128 5811231

Neighbor

gene id symbol gene type direction distance location
CI01000016_05793987_05797545 NA coding downstream 5583 5793973 ~ 5797545 (-)
CI01000016_05781693_05789936 DBPB coding downstream 12765 5781189 ~ 5790363 (-)
CI01000016_05765402_05775268 NTD5 coding downstream 27831 5764776 ~ 5775297 (-)
CI01000016_05759240_05762146 NA coding downstream 39154 5758984 ~ 5763974 (-)
CI01000016_05734861_05742853 NA coding downstream 60275 5734562 ~ 5742853 (-)
CI01000016_05824628_05826424 UBE2S coding upstream 11892 5823123 ~ 5826424 (-)
CI01000016_05843077_05863364 TTYH1 coding upstream 30889 5842120 ~ 5863364 (-)
CI01000016_05871353_05874812 NA coding upstream 59953 5871184 ~ 5874812 (-)
CI01000016_05910340_05911197 NA coding upstream 99021 5910252 ~ 5912172 (-)
CI01000016_05930860_05934507 RCVRN2 coding upstream 119622 5930853 ~ 5934507 (-)
G97252 NA non-coding downstream 25460 5777404 ~ 5777668 (-)
G97215 NA non-coding downstream 229559 5566293 ~ 5573569 (-)
G97203 NA non-coding downstream 236975 5565197 ~ 5566153 (-)
G97180 NA non-coding downstream 249142 5553295 ~ 5553986 (-)
G97165 NA non-coding downstream 391208 5411655 ~ 5411920 (-)
G97255 NA non-coding upstream 23339 5834570 ~ 5834911 (-)
G97185 NA non-coding upstream 70146 5881377 ~ 5887097 (-)
G97188 NA non-coding upstream 76450 5887681 ~ 5923379 (-)
G97191 NA non-coding upstream 83423 5894654 ~ 5908304 (-)
G97282 NA non-coding upstream 141727 5952958 ~ 5959473 (-)
CI01000016_05412782_05415867 NA other downstream 384911 5412248 ~ 5415906 (-)
CI01000016_05325805_05330265 COX6B2 other downstream 472282 5325519 ~ 5332874 (-)
CI01000016_04921091_04922518 NA other downstream 879724 4918975 ~ 4922518 (-)
CI01000016_03921124_03930996 NA other downstream 1872077 3920055 ~ 3931162 (-)
CI01000016_03647744_03675574 NA other downstream 2137815 3647653 ~ 3675585 (-)
G97341 NA other upstream 347755 6158986 ~ 6159721 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 other upstream 3077602 8888833 ~ 8894737 (-)
CI01000016_08926089_08945071 NA other upstream 3125558 8925960 ~ 8945229 (-)
G98679 NA other upstream 3423765 9234996 ~ 9239929 (-)
G98691 NA other upstream 3444871 9256102 ~ 9257611 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010525 shisa7a coding NC_007127.7 CM002900.2 13636704 ~ 13662514 (-)