XLOC_007917


Basic Information

Item Value
gene id XLOC_007917
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 28911909 ~ 28915186 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016055
aaatgacactgtgactttgtgtacatacagaattgaaggtcaggtgttgctgactacagataggttcttaaatggaggcatgtgaaaggtgggtaaaatatttattttgtactactatgcctggcatatccagataaaataaatattacagtgtatttatcaatgatacttttgcagcaaggaaagtgaaacttcagctagaccttacaacatgaagatcctgctttcaacatctgatcaacacctgattttcatctgagagtaccaacatgttacaaatgagaattttccccacaaattctttgcaaaactagaccaccacctatttcatttgatgacaattttaaggcaaacagcatccaaaactggcaagacagcagataccctggctaatcttttaaaggtttatgatgagcaggtatgtttggggtcacgtgttaaagtatacattaaaatataatttgaattattattatttttttaatttttaaaaaattgattcttgatttccaggaactgaatgatgtcagttcatgacggactactgttatcagaggtcttttggtcttgctgcgtgagcgtgacttaagattctttaggaacaccatgattgataatcctgctgactgaagatgctttattggccctgcattcactgagggtctctgttgtcctgaagaatgaattggacaccacccacagcacacttccagacctttcttgtcttcagactccagctcgtgacgatcccacatccgactactcactgtccttcacttacttcccagagcacctcacctcgaagaagagcaccgtttacaccccattcacgttgtaaataaagcaccctccggggacttgtctgtaaacttatccaactgtgtcgctgttttccctctgcttcgctacaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatata
>TCONS_00016054
aaatgacactgtgactttgtgtacatacagaattgaaggtcaggtgttgctgactacagataggttcttaaatggaggcatgtgaaaggtgggtaaaatatttattttgtactactatgcctggcatatccagataaaataaatattacagtgtatttatcaatgatacttttgcagcaaggaaagtgaaacttcagctagaccttacaacatgaagatcctgctttcaacatctgatcaacacctgattttcatctgagagtaccaacatgttacaaatgagaattttccccacaaattctttgcaaaactagaccaccacctatttcatttgatgacaattttaaggcaaacagcatccaaaactggcaagacagcagataccctggctaatcttttaaaggtttatgatgagcaggtatgtttggggtcacgtgttaaagtatacattaaaatataatttgaattattattatttttttaatttttaaaaaattgattcttgatttccaggaactgaatgatgtcagttcatgacggactactgttatcagaggtcttttggtcttgctgcgtgagcgtgacttaagattctttaggaacaccatggtaagacttcattcattcttttcacaattaggcatgtttaatgaaaagatgaaagttttgaaaacttttacttaataacatatttgtaatcacgaatagttgatgaatcatataatattggctcagtcattttgatactgtccttacattaatatccttgaattatgtttttagattgataatcctgctgactgaagatgctttattggccctgcattcactgagggtctctgttgtcctgaagaatgaattggacaccacccacagcacacttccagacctttcttgtcttcagactccagctcgtgacgatcccacatccgactactcactgtccttcacttacttcccagagcacctcacctcgaagaagagcaccgtttacaccccattcacgttgtaaataaagcaccctccggggacttgtctgtaaacttatccaactgtgtcgctgttttccctctgcttcgctacaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatata

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0007498 mesoderm development biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0000154 rRNA modification biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0000469 cleavage involved in rRNA processing biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0048339 paraxial mesoderm development biological_process
GO:0048340 paraxial mesoderm morphogenesis biological_process
GO:0048341 paraxial mesoderm formation biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0007389 pattern specification process biological_process
GO:0061053 somite development biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0031167 rRNA methylation biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0030684 preribosome cellular_component
GO:0030686 90S preribosome cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0140102 catalytic activity, acting on a rRNA molecular_function
GO:0008649 rRNA methyltransferase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016055 False 971 lncRNA 0.37 4 28911909 28915186
TCONS_00016054 True 1145 lncRNA 0.35 3 28911909 28915186

Neighbor

gene id symbol gene type direction distance location
XLOC_007916 NA coding downstream 315179 28594185 ~ 28596730 (-)
XLOC_007915 NA coding downstream 331101 28577473 ~ 28580808 (-)
XLOC_007914 insb coding downstream 343757 28563081 ~ 28568152 (-)
XLOC_007913 zgc:113364 coding downstream 377346 28530153 ~ 28534563 (-)
XLOC_007912 nxt2 coding downstream 438270 28459439 ~ 28473639 (-)
XLOC_007918 CABZ01048945.1 coding upstream 437821 29353007 ~ 29353123 (-)
XLOC_007919 NA coding upstream 786134 29701320 ~ 29701634 (-)
XLOC_007920 NA coding upstream 791518 29706704 ~ 29707043 (-)
XLOC_007921 pdlim3b coding upstream 867322 29782508 ~ 29800107 (-)
XLOC_007922 sorbs2b coding upstream 891911 29807097 ~ 29906209 (-)
XLOC_007641 CU855896.1 misc downstream 26504069 2407736 ~ 2407840 (-)
XLOC_007640 CU855896.2 misc downstream 26504478 2407328 ~ 2407431 (-)
XLOC_007639 CU855896.3 misc downstream 26504837 2406945 ~ 2407072 (-)
XLOC_007910 CU019650.1 non-coding downstream 783631 28128158 ~ 28128278 (-)
XLOC_007908 NA non-coding downstream 906646 27987463 ~ 28005263 (-)
XLOC_007907 NA non-coding downstream 1197872 27698025 ~ 27714037 (-)
XLOC_007925 NA non-coding upstream 1382188 30297374 ~ 30298171 (-)
XLOC_007930 FP015860.1 non-coding upstream 1596295 30511481 ~ 30536884 (-)

Expression


Co-expression Network