CI01000016_06998707_07047702


Basic Information

Item Value
gene id CI01000016_06998707_07047702
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 6998534 ~ 7047702 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_06998707_07047702.mRNA
ATGTGGGACAAGCGTCTGCATCCTGCAGCTCAAGCCCCGCTGTTGCCGAGGCAAAGCGGAGGTTTCAGTCATGGGGATCGCAGGATCAGTCTGGAGCAACAGTCATCTCAAACTGTGACTTTCCCTGCTGTTCCCATGGTAGCAGGTGAAATGCCTATCACTATTGCACTTTATGAAGATGAAGAAGAAAAAACAAAAGTGGATGCTATTCAAAAGATGTTTTTGGTCGAGAAATACAAGCACATCGAGAGATCAGTAGTGAGGGAGACGTTCTTGCCTTTAATTTCAGACGCAATGTCTGCTTTTAGAGAGTCGTATTTGTTTACAGAATTCACCAATGCTCGTTTGCTTCGTGGACTTACACTCACTATGGAGGTGTACATGTGTCCTCTTCTCTATCTGCTGCTATGCATGAGTTGTGCTGTTCAGGGAGATAATAAGAGATTCCTAATCACTGCTCCGAGTGTCTTTCATGTTGGTGTGAAAGAACCCATATGGATTCAAGTGGGGGAGGCATTGCTCGGCAAACCTGTGTCCTGTCAGTTAGAAACGGAGATGCGTATTCCCATGTCCAAACGGGAGACCATAACAATCACCAATAAAGGAGCGTTTGAGGCAATCAAGCTTGAGATATTTGCAGATGAAGTTTCAAACCTGAAATCGATCAATGGAGAACCTCCTTATCTCAACCTGGCATGTGAAGTTGATGGTCAGAAAAGGCATACCCGCGTCCTGGTCTCCAAACACAGTGGCTACATCTTTATTCAGACTAACCAACCCATTTACAACCCTACCCAGAAAGTTTGGTTCAGGATCTTCACTCTGGACCACTCTATGCGACCAAAATCAGAGATAGTTCATGTCTCTTTGTATAATGCTGATGGGAACAAAATCAAGAAATCAGTGCACAAAGTTACAGATGGCATTCTGTCAAAGGCCTACCACATCCCTGATATTTCAAAACCTGGTGTATGGAAGATTACAGCACATTACAAAGGTGACGAGAAAAATCCTGCTGTGCGTGAATTCAAGGTGAAAAGAGGCCATGCTGAGGTTACAGTTAAAATTTCAGATATCAGCCAAAAACTGAATTCAACATTAGAAGATTTGGCAGTGACTCGGGCCCAATTCTACATTGCTGTCACAGTCACGGATATTTTAAGTGGTGAGGTACAGGAATCGGCAGCTTTCCTTCCCATTGTTTTGAGTCCATACAATGTGGATCTGTCTCGGACAAGATTGTTTTACACACCTGGATTTCCCTTTCAAGCTGTGGTCACAGTCCATCACCCAAATGGTTCCCCAGCTGAAGGCATTCAAGTGAACTTAGATGTCTCAAGCACCCAAGAAAAGTCAATAAATATTAAAACTAATGAAGAGGGAATCGCATTTTACACTTTCAATGTGAAAGGAACGCCATCTTCCATTTCAGTGCAGGCAACAGTGGACAGATTCAAATCAACAAAAGAAGTGCGCCCAGTGAAATCTACAAAGAACAGCTTCCTGTATCTGAGTGCAACTAATAAAGTCCTGTCATCAGAAGAGTCTCTAGATGTTACATTTAATGTCAAGGGCAATCCAGTAGATAGGCAAATATATTATATGATTGTCAGCAGAGGCATACTAAGAAGCGCGAGCTCTGTTGCATCAGGTTCTGTTGTAAAAATATCCATCCGTATCAGCCCAGAGATGATCCCTTCCTTTAGAGTTATCACCTTTTACTATGACACAGATGGTGACATTATTGCAGATTCAATGTGGGTGGATGTAAAGGACAGGTGTGAGGGAAAGCTTGAGATAAAACTGAATCGCAATCAGAATTATCAGCCAGAAGATTCAGCTGAGCTTGACATTGATGTAGGAACACAGAATGCAAAAGTGGCCTTACTAGTTGTGGACAAAGCCATTTATGCCCTGGGTTCTCAAAACAAACTCACTCCAAAACAGGTGTTCACCTCCATGCAGTCTTATGATCTGGGGTGTTCATATGGTGGTGGAGAGAACGCAGCTGCTGTTTTTAATGATGCTGGTCTGGCCTTCATCTCGCACTCAACCACAATCCGTTCAATGATGAGAAAAGGTTTCACCTGCGAGTCTGGCTTTAGGCGCAACAAACGCTCTGATGATATTCAAACAGAAATGGCTCAAAAAGAGGCTGCATTTAAGAAAGCAGAATTGCAGAAATGCTGTCGCCATGGTTTCACCCTGATTCCTATGAAGTTTACTTGCGAGGACCGAGCGAAAAGAGTGAGCAAAACAGAAAGCAAAGATTGTGTGGATGCCTTCCGAGAGTGCTGTGAGTTTGCAACCAAGCTAAGAGACAAAAAGAGGAAAGAGGACCTGAAGAAAGGGCATGGCAGAACTGTTGATTCTAACGAAGTTGAGGAATTCTTTGACTTTGAAACACAAACAATTCGCCGATATTTCCCTCCAAGCTTTGAGTTTAAGCAGATGGATGTGAAAGGAAAAGTTAGACACACAATCCATTTACCCCACTCTATTACAACATGGGAGATCCAGGCTCTCAGCTTATCTCCATCCCATGGTTTTTGTGTGGCGGAACCTGTAGACCTACTTGTATTCAAGCCAGTGTTTATTTCCTTGAGGCTTCCCTATTCAGTCAAACGCTATGAGCAACTGTCTATAGTTGTGGTGATCTTTAATTACGGAAAGATGGAAAGGGAGCTTGTTGTGCAAATGAAACAAGTGGATGGTCTTTGTTCACCCGGGTCAGCATCTTCATCTTCCACTGTCAGAATCAGTCTGGAGGAAAAGTCATCTCAAACTGTAACTTTTCCTGCTGTTCCCATGGTAACAGGCCATATCCCTATCACTATTGCACTTTATGAAGATGATGAAGAAAAAACAAAAGTGGATGCTATTCAAAAGATGCTCTTGGTTGAGAATGAGGGAGTGGAAATCAGAGAAGAGAAGACTTATTTTATTAATCTGAATGGTAGAAGTGATCGGCGCTTCTTTATCGAGGGATTTTACCCAAACAACACCGTTCCTGAAACGGATGTCAACCTGTTTGTCAAACTAGAAGTGGAAAATCTGATCCGGGCACCGAAAGGCTGCGGAGAGCAGACTATGATCTTCATGTCTCCAACTGCTTTATCAATCCGCTACCTGGACAAAAGCCAGAGATGGCTGGAACTGGAAGCAGGATCCAGAGACAAAGCATTAGATTTCATTGAGCAAGCTTATGATCGAATTTTAACATTCAAAAAGCCTGATGGATCTTATGGAGCTTGGCTACACCATCCGACAAGTACCTGGTTGACTGCGCTGGTGGTGAAAGTGCTGTCTATTGTGGCTGATCGACAGATAGAAACTCTTGAAAAGCAAGGAACAATAGAAAGGTTGATTTCACAGGAGGACATCCGCCAAGCAGTCACATATCTGATTAAAACACAGAGCTCAGATGGATCCTTCACTGATGCTAATCCAGTCTATCACAGGGAAATGCAGGGAGGTATTGGAGGAGTTGAACAAGATGCCTCTTTAACAGCTTTTATCACGATAGCCCTCAAACATTCCCTCCCTTTCTTGGACAGAGAAATAACCAATGTGGAGAAAAGCATCTCTCGTGCCACCAACTTCCTCCTTAAACGGGTTGATGATCTTAAAAGACCTTATGCTTTAGCCATTACGGCGTACTGTTTGTCAACCTGCCTCACTGACCAAACTCAAGCAATGTCAGCATGGAGGAAACTCAAAAGTTTTGCAAAACCAGATGATGACAATATGCGACTGGTAAATGAGGTTAAAAGTAATCGTGTGCCCCCTGGAATGGCATTAACAGTAGAGACCACTGCATACGCTCTCCTGACTGCACTAGCACAAAATGACTTAATAACAGCACATGCTGCTGCATGCTTCTTGTCTTCACAAGAGAACTATGAAGGAGGTTTCAAATCAACACAGGACACTATCATGGCTTTGGAAGCCCTCTCAGAGTATGCACTGAGAATACCAGACACACCCATCACTATAGTCAATGCACAGTTCACCGTTCCAGGAAGGTCTGAGATGGAGAAGCTGCATTTGGACAAACATGAAAAGAAAGTGGAAACAGAATTAAAGAGACTAGTAGGAAGAGGAATAGATGTAAGCCTTTCAGGAGAAGGAAAAGTTAAAATGAAAGTGGCAAAGGCATATTATGTTCTTAAGGAAGACTCCAACTGCGCTGATTTGTCAATAAATGTGACTGTAAAGGGAAAAGTGGAATACACAACTGAAGTGCAACAAACTTACAATTACTATGAGGACTATGGAGAGGCAGAAGAGAGGAATGAGGAGGAAGATCTCCCCCAGTCGGCCATTGAGTGGTTTGATGCTCGTAGCAGGCAAAGAAGAGACACCACTCAAAACACGCTAAATGATGTGGTCTATACACTGAAAGACCTGGTGGACAGATATATTTCTCACTATGAGTTCACACGTGGAAGAGTGCTGTTGTACTTCAATGAGATAGAAGGAGGTGAGGCCTGTGTAGCATTCGGAGCCAAGCAAAGTGTGCCCATTGAATTAGTTCAACCAGCTCCTGCTACGTTTTATGATTACTATGAACCAGACAGGAGATGTTCTGTGCTGTACAGCGCCCCCAAGAGGAGCAACATGGTTTCTGTCCTGTGCTCAAATGATGTGTGCCAGTGTGCTGAAAGGGGCTGTTTCACCGAGAAGAAAACAATTGAGATGAACATCACCAAAAAGGGCAGATTTGATTATGCTTGTTACCACTCCAACATTGACTATGCACTTGAAGTCATTGTGGATTCAGTTACTGAAGAGAGCAACTTTATGTTGTATTCAACATCTGTGAATGTGGTCCTCAGAAACACGGGAGACTTGGACGTTAGCCCAGACAGCACACGGGTGTTTGCAAAGAGAAAGCACTGCAAGGGTGAGCTGAAAAAGGGCATGACATACCTCATCATGGGCAATGATGGCCCCACCAAAGACTCAAAGGGAAACATGCAGTACCTGCTGGATTCAAAGACATGGGTTGAGCAGAAGCTATCAGCTTCAACATGCAAAGCATCAGTCAACAGGATTTACTGCAAGGGGCTGAGAGATTTTGTGAAAGAGTACCAAGTTGATGGGTGTAACATTTAGCCTGATTTGCAATTTGGGGGAATTTAATTATTCCACATCACTACAGCAGAGGAAGAATCTACATTTATCCTGAATTGTAATTCAGCATTTCTTTTTATGCTACAGATTATGATAACTGAGAAGAACCTGTATGACATACGTTTTCTTTATCTGTAATCATGTCTTAAAATAAA
>TU111028
CTTTTAGAGAGTCGTATTTGTTTACAGAATTCACCAATGCTCGTTTGCTTCGTGGTGTGCGTCTTACTAACATTTGCCTTTGTTGTTAGATGTTTCAATTGTAGGTAGTTGTGCATAGCCGTCGTACTGCTGTTGTATTTTAAAGTAGTCTTACAGAGTTGGCAAATTACAAATTGTTTTTGTCATCCTTGAAATAATTCCACACATCTGATGCGTTGTAAACGATGTGGTAAGAACCAG

Function

NR:

description
complement C4, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_06998707_07047702.mRNA False 5291 mRNA 0.43 41 6998534 7047702
TU111028 True 240 lncRNA 0.38 1 7044621 7044860

Neighbor

gene id symbol gene type direction distance location
CI01000016_06975396_06992012 NA coding downstream 6522 6975017 ~ 6992012 (-)
CI01000016_06963083_06974158 NA coding downstream 24346 6963083 ~ 6974188 (-)
CI01000016_06905366_06911635 KIFC3 coding downstream 86899 6905315 ~ 6911635 (-)
CI01000016_06814184_06871990 NBEAL2 coding downstream 126544 6814024 ~ 6871990 (-)
CI01000016_06788704_06796860 NRADD coding downstream 201674 6788672 ~ 6796860 (-)
CI01000016_07056612_07073504 NA coding upstream 8680 7056382 ~ 7074008 (-)
CI01000016_07088885_07090963 NA coding upstream 40986 7088688 ~ 7091043 (-)
CI01000016_07118966_07120089 NA coding upstream 71153 7118855 ~ 7120089 (-)
CI01000016_07127481_07148708 NA coding upstream 79763 7127465 ~ 7148895 (-)
CI01000016_07191021_07191531 NA coding upstream 143306 7191008 ~ 7191791 (-)
G97545 NA non-coding downstream 53888 6944345 ~ 6944646 (-)
G97530 NA non-coding downstream 193196 6804934 ~ 6805338 (-)
G97428 NA non-coding downstream 271025 6727127 ~ 6727509 (-)
G97517 NA non-coding downstream 355729 6642270 ~ 6642805 (-)
G97516 NA non-coding downstream 356422 6641867 ~ 6642112 (-)
G97559 NA non-coding upstream 4488 7052190 ~ 7052836 (-)
G97561 NA non-coding upstream 12352 7060054 ~ 7060347 (-)
G97562 NA non-coding upstream 13877 7061579 ~ 7061917 (-)
G97564 NA non-coding upstream 15405 7063107 ~ 7063325 (-)
G97566 NA non-coding upstream 16642 7064344 ~ 7064589 (-)
G97341 NA other downstream 838813 6158986 ~ 6159721 (-)
CI01000016_05412782_05415867 NA other downstream 1580317 5412248 ~ 5415906 (-)
CI01000016_05325805_05330265 COX6B2 other downstream 1667688 5325519 ~ 5332874 (-)
CI01000016_04921091_04922518 NA other downstream 2075130 4918975 ~ 4922518 (-)
CI01000016_03921124_03930996 NA other downstream 3067483 3920055 ~ 3931162 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 other upstream 1841131 8888833 ~ 8894737 (-)
CI01000016_08926089_08945071 NA other upstream 1889087 8925960 ~ 8945229 (-)
G98679 NA other upstream 2187294 9234996 ~ 9239929 (-)
G98691 NA other upstream 2208400 9256102 ~ 9257611 (-)
CI01000016_09510177_09512196 ID4 other upstream 2461920 9509622 ~ 9512428 (-)
G97557 NA non-coding upstream 797 7045657 ~ 7045896 (-)
G97558 NA non-coding upstream 1229 7046089 ~ 7046309 (-)

Expression


Co-expression Network