CI01000016_09959197_09962175


Basic Information

Item Value
gene id CI01000016_09959197_09962175
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9957922 ~ 9963244 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_09959197_09962175.mRNA
ACAAAGAGCAAAACGAACGCTGGTTTAAAGTGAATATTTACCAATAAATAGTCTAAATAAATAAATAAATTAAAAAAATTAAACCAAACCGAAACGATCGGTCATTTTCTAAAAAAAAAAAAAAAAAAATCAAAAATGTATATGCTTTATAGGCACAAATGATCGCATCACAAGTGCTTCCACCAGAACTCGATTCTGTATTCTTCAAAAAGCTTACGCTGAATGTCCTACGCCTTCCTTATTCAACTTACGGAACGAACGCGGCGCCAGTTCCGTTTTTTCCGTAAGTTGAATAGGGAAGGCGTAGGACATTTAGCATAAGCTTTTTGAAGAATACGGAATTGCGTTCTGATGGAAGCACTTGTGATGCGATCATTTAGAAAATGACCGATCGTTTCGCTAGATAAGACCCTTATTCCTCGTCTGGTATCGTTTAAAGCCCTTTGAAGCTGCACTGAAACTGTAATTTTGACCTTCAACCGTTTGGAGACCATTGAAGTCCTATAAGGAGAAAATTCCTGGAATGTTTTCATTAAACCTTAATTTCTTTTCGACTGAAGAAAGAAGGACATGGACATCTTGGATGACATGTGGGTGAGTAAATTATCAGGAAATTTTTATTTGAAAGTGAACTATTCCTTTAAGAAGCACTAGAATAACCTTCAACTAAATCAACTAACCTCCAACTCAGTCCCCTGTTTTCGCTTCATTACGAGAGACTGTCTTGTTTTACATGAGTTATAGTCTTATCCCAGAGACCTGAGGTTAGTAAAGAGTTATTGGCTCGAGAACCGGTCGAAACGATTCTGTCCGTTTAATGAACTAATCATTGAGATTGATTTTTAAACCGGTTCAACAGATTAAAAGATCCGACTCAGAAGAACGATTCTTTCACGAATGGACTAAACCTTCACCATAGTAGGATATGTTTCCTTTCTTTAAGGAGTAGGGATTATTTCGTTGCTCATTCGGGAAGTTTTTTTTTTTTTTTTTTTTGTAATTCCGTTAGAATGGAGGTCGACTCCGAGTCCGGCATCGACAGCAGCGGTACTGACAGAACCAGTAAAAGCTCGAATATAGAGAGTTTAGGCTTGTCACACTCCAAGTTGGCTTATGATGGGAACTTTATTCGTTCTGCGTGTGGCATGTTTATGGCTGGAGAAATCGTGTTTGGGCTTCTGGTGTGGACTTTGATTGGTGGGACGGAGTACCTCCATGTTCCTGCACTGGGGTGGGTAATGTTTGTGTCAGTCTTTTGCTGGGTGCTTACTGTCATTCTCTTCCTCTTATACCTGACCATGGCCCACACCAGGATTCCCCAGATCCCATGGAAAATTCTGATATTTGCCTCACTGGCTGTGGTGTGTTATGCAGGAAATACAGTTGTGAATTACAAATCCTGGAGAACAAAATGTGAAGATACATAAGCAGAAACAGATTTTTTTTTTTTTTTTTTTTTTAATTATTCCTGAGGTATTATTTATGCGAATTTAAAGAACCACATAACAAGACAATTTTGCTGTGGTTATATATATATAGCATTGTTCTTATAAGTAAAACTTTAAATGTTATGAGGTCTGGCTATTATGACACTAAATTACTCCAATGAGTTAGTTCTTTTTAGTGAATTAGTCACAGCTAATCAGTGTAATAGTTACTGATTGGTTATTCATATGACAGTGTGTAGTTAAAGATGTCTTTTTTTCTGTTTGTTTAGCATTGCTGTTTAATATTAAGGCCAATTATTGGATTGCATTTATGTTGCTTCTAAAAAGACTGAAGTAAAGTCCCTTTAAGACAAGTCATTTCATTTCACTCGGCAGCAGCTCCTATCTCTCTGAATGGGGAAACATCAAATTCTGCAAAGCTGTTTGCCAAGCTTTTGATTAAATTTCGCCTGACTGTTTCTGTTCGGTTGTTGAGTCTGACGTCACGCGGCAGCGCTTCCGGGTCCAAGCGGTCTATCTCCTACCACAAGAAAACAACAAACGGTGCTAATATACACACACAATGTGGTGTAATACTACCAAAAAAATTGTAATCATCATAACCTTTATCTCCATACCAAAGTCCCAGATGGCCAGACAGTGATTCATCTTTTATAAATTGTTAAAATATTAATGTTTGTGACGCTGTGAGCACGGAGACTGTTGTGTAGACTGTAAGTATTTTAAATGTTTAACTTTTTAAAATGTTAAATGTTTAATATGAATAAATAGCGTCCATAAACGGCCATCAAGATGGCATTTTCAAGTGAAACGAGTCGAGGCTTGGACCCAGAAACGGCGTTGCTTACGTCACGACTTAACAAGTTGATAGGAATCGGAGCTTCTAATGGCCGCTGCAGTGACACGATGACTTTACTAATCAGCGATTGGCTCTTATTTAGAAGGCGGGCCTTATTCCACCATATTGCACGTTGCAATTTCTCCCATTCAAAACAATATGAGTGATGAGTCTTGTGTTATTCTATAGTCTTTGACTGAAGTCACTAAAAAGACACCTTTTGCAAGAACTGCTTTGGCAATGGAATTGTTAAAAAATAAATATATTTATTTAATATTCCTCCATTAAGATTTCATTTCATTTTTTCAGTCCAACTAAATTTTATGCTTTAACCCACAATTCTGTTGTGTACCTTAAGGCATTGTCATATAATTATTATTGTGTATATATCTAAAAAAAAGCTTTTCTGTATTAAA
>TU112937
GGAATAGCCTAGTTTGTTATTCGGTAGCCTACAAATAGCCCATGCCTATCCATTAGAACACAAAGAGCAAAACGAACGCTGGTTTAAAGTGAATATTTACCAATAAATAGTCTAAATAAATAAATAAATTAAAAAAATTAAACCAAACCGAAACGATCGGTCATTTTCTAAAAAAAAAAAAAAAAAAATCAAAAATGTATATGCTTTATAGGCACAAATGATCGCATCACAAGTGCTTCCACCAGAACTCGATTCTGTATTCTTCAAAAAGCTTACGCTGAATGTCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_09959197_09962175.mRNA False 2702 mRNA 0.37 3 9957922 9963185
TU112937 True 288 lncRNA 0.32 1 9962957 9963244

Neighbor

gene id symbol gene type direction distance location
CI01000016_09739013_09746676 NA coding downstream 211246 9739013 ~ 9746676 (-)
CI01000016_09654611_09661197 NA coding downstream 296725 9653502 ~ 9661197 (-)
CI01000016_09638800_09651752 CEP76 coding downstream 306170 9638592 ~ 9651752 (-)
CI01000016_09510177_09512196 ID4 coding downstream 445557 9509622 ~ 9512428 (-)
CI01000016_09475913_09487996 NA coding downstream 469630 9474997 ~ 9488292 (-)
CI01000016_10025722_10027148 NA coding upstream 62317 10025502 ~ 10027259 (-)
CI01000016_10089136_10135299 NA coding upstream 125531 10088716 ~ 10135299 (-)
CI01000016_10228314_10299064 ULK4 coding upstream 265129 10228314 ~ 10299064 (-)
CI01000016_10386099_10386648 NA coding upstream 422640 10385825 ~ 10387482 (-)
CI01000016_10443526_10488009 NA coding upstream 479660 10442845 ~ 10488186 (-)
G99225 NA non-coding downstream 39746 9917896 ~ 9918176 (-)
G99217 NA non-coding downstream 69772 9887657 ~ 9888150 (-)
G99216 NA non-coding downstream 70335 9887373 ~ 9887587 (-)
G99204 NA non-coding downstream 102093 9855622 ~ 9855829 (-)
G99201 NA non-coding downstream 105485 9852206 ~ 9852437 (-)
G100209 NA non-coding upstream 40571 10003756 ~ 10003959 (-)
G100213 NA non-coding upstream 52968 10016153 ~ 10016831 (-)
G100214 NA non-coding upstream 53771 10016956 ~ 10017211 (-)
G100215 NA non-coding upstream 54611 10017796 ~ 10018869 (-)
G100216 NA non-coding upstream 57618 10020803 ~ 10021100 (-)
G99178 NA other downstream 142967 9814361 ~ 9814955 (-)
G98691 NA other downstream 700311 9256102 ~ 9257611 (-)
G98679 NA other downstream 717993 9234996 ~ 9239929 (-)
CI01000016_08926089_08945071 NA other downstream 1012693 8925960 ~ 8945229 (-)
G100190 NA other upstream 87983 10051168 ~ 10052389 (-)

Expression


Co-expression Network