Gene
RNA
| Item | Value |
|---|---|
| gene id | G97165 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000016 |
| NCBI id | null |
| chromosome length | 12175457 |
| location | 5411655 ~ 5411920 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU110556 | True | 266 | lncRNA | 0.36 | 1 | 5411655 | 5411920 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000016_05374626_05378364 | NA | coding | downstream | 32982 | 5373845 ~ 5386465 (-) |
| CI01000016_05325805_05330265 | COX6B2 | coding | downstream | 78781 | 5325519 ~ 5332874 (-) |
| CI01000016_05313099_05322439 | SLC2A3B | coding | downstream | 88708 | 5312803 ~ 5322947 (-) |
| CI01000016_05249001_05286683 | EPHB6 | coding | downstream | 124972 | 5247560 ~ 5286683 (-) |
| CI01000016_05233964_05243756 | NA | coding | downstream | 167287 | 5233656 ~ 5244368 (-) |
| CI01000016_05412782_05415867 | NA | coding | upstream | 328 | 5412248 ~ 5415906 (-) |
| CI01000016_05426889_05429942 | NA | coding | upstream | 13856 | 5425776 ~ 5429942 (-) |
| CI01000016_05461674_05464777 | FOXJ2 | coding | upstream | 49754 | 5461674 ~ 5464777 (-) |
| CI01000016_05468882_05473383 | ISOC2 | coding | upstream | 56843 | 5468763 ~ 5473383 (-) |
| CI01000016_05508930_05523828 | CACNG8B | coding | upstream | 96167 | 5508087 ~ 5523828 (-) |
| G97160 | NA | non-coding | downstream | 9286 | 5402143 ~ 5402369 (-) |
| G97148 | NA | non-coding | downstream | 69855 | 5341039 ~ 5341800 (-) |
| G97012 | NA | non-coding | downstream | 206842 | 5192792 ~ 5204813 (-) |
| G97139 | NA | non-coding | downstream | 220227 | 5191026 ~ 5191428 (-) |
| G97180 | NA | non-coding | upstream | 141375 | 5553295 ~ 5553986 (-) |
| G97203 | NA | non-coding | upstream | 153277 | 5565197 ~ 5566153 (-) |
| G97215 | NA | non-coding | upstream | 154373 | 5566293 ~ 5573569 (-) |
| G97252 | NA | non-coding | upstream | 365484 | 5777404 ~ 5777668 (-) |
| G97255 | NA | non-coding | upstream | 422650 | 5834570 ~ 5834911 (-) |
| CI01000016_04921091_04922518 | NA | other | downstream | 488251 | 4918975 ~ 4922518 (-) |
| CI01000016_03921124_03930996 | NA | other | downstream | 1480604 | 3920055 ~ 3931162 (-) |
| CI01000016_03647744_03675574 | NA | other | downstream | 1746342 | 3647653 ~ 3675585 (-) |
| G95070 | NA | other | downstream | 2426014 | 2985260 ~ 2985641 (-) |
| G97341 | NA | other | upstream | 747066 | 6158986 ~ 6159721 (-) |
| CI01000016_08893013_08893496 | NPPCL, ANFC1 | other | upstream | 3476913 | 8888833 ~ 8894737 (-) |
| CI01000016_08926089_08945071 | NA | other | upstream | 3524869 | 8925960 ~ 8945229 (-) |
| G98679 | NA | other | upstream | 3823076 | 9234996 ~ 9239929 (-) |
