G96335


Basic Information

Item Value
gene id G96335
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 7049376 ~ 7049893 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU109579
GTGTATCCAATATGGCTTCCTGTTGCTTCAGCCATCTAAGCCTATCTCCCCCTCTAATGTTTAATGACACTTGTTGCCAGTTACCTTCAAGGAATTGTCACTTCCATGTTTTCTTGTATAAAATGTTTCAGCATTGGATAATTCATATTTGCAGTGCGTAGAGTGGCTGAACACAGCCACTCTACGCACTGAAAATATGAATTATCCCATAGCGAAACATTTTATACTAAAATACTAAAAAAATTGAATTGAACTGAACTGCGCATAACATTACATTTGCAGCTCATTTTAACAAAAGGTCAGATGTCCTTGCTTCCTTTGAAGCACAAGATGCTCTTTGGATCAAATTATGCTGGATAACATGATCATCATGTCTTGCACAAATGTGTGGAGCCCGTACAGTGTTGATTAAGTGGCTATTAAACACAGGCATTGCTAATTCATACAGCAGTGTGCAAGCAAAAAACATAAATATTGCTTGTTTCTTATATCTTACATTTTTCTTATCATATCATCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU109579 True 518 lncRNA 0.36 1 7049376 7049893

Neighbor

gene id symbol gene type direction distance location
CI01000016_06954301_06958598 NA coding upstream 90773 6954301 ~ 6958603 (+)
CI01000016_06890651_06904100 NA coding upstream 144742 6890146 ~ 6904634 (+)
CI01000016_06813604_06813789 NA coding upstream 235439 6809807 ~ 6814285 (+)
CI01000016_06756366_06782229 SETD2 coding upstream 266757 6756366 ~ 6782619 (+)
CI01000016_06684506_06687365 NA coding upstream 361971 6684506 ~ 6687405 (+)
CI01000016_07178060_07180135 NA coding downstream 128167 7178060 ~ 7180810 (+)
CI01000016_07214392_07233533 RXRBB, RXRBA, RXRB coding downstream 164499 7214392 ~ 7234962 (+)
CI01000016_07445055_07456795 SLC6A19B coding downstream 395162 7445055 ~ 7457431 (+)
CI01000016_07463735_07471367 NA coding downstream 413842 7463735 ~ 7471828 (+)
CI01000016_07484583_07551063 NA coding downstream 434690 7484583 ~ 7551063 (+)
G96306 NA non-coding upstream 7590 6973117 ~ 7041786 (+)
G96307 NA non-coding upstream 9532 7004346 ~ 7039844 (+)
G96320 NA non-coding upstream 76448 6971338 ~ 6972928 (+)
G96319 NA non-coding upstream 79007 6970129 ~ 6970369 (+)
G96318 NA non-coding upstream 79776 6967566 ~ 6969600 (+)
G96338 NA non-coding downstream 6524 7056417 ~ 7057100 (+)
G96339 NA non-coding downstream 7613 7057506 ~ 7057708 (+)
G96341 NA non-coding downstream 9243 7059136 ~ 7059596 (+)
G96342 NA non-coding downstream 11332 7061225 ~ 7061427 (+)
G96344 NA non-coding downstream 13666 7063559 ~ 7063804 (+)
CI01000016_05405791_05407797 AICDA other upstream 1641513 5405791 ~ 5407963 (+)
G95792 NA other upstream 1823435 5219880 ~ 5225941 (+)
CI01000016_04829592_04837305 NA other upstream 2212721 4829592 ~ 4837457 (+)
G95648 NA other upstream 2775471 4272636 ~ 4273905 (+)
G95439 NA other upstream 3185519 3862175 ~ 3862305 (+)
G96389 NA other downstream 110748 7160641 ~ 7161290 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other downstream 734172 7783987 ~ 7784996 (+)
G97824 NA other downstream 964470 8014363 ~ 8015775 (+)
G98288 NA other downstream 1946205 8996098 ~ 9002717 (+)
CI01000016_09796196_09842235 NA other downstream 2745738 9795950 ~ 9842576 (+)

Expression


Co-expression Network