CI01000018_04239141_04241413 (CCDC58)


Basic Information

Item Value
gene id CI01000018_04239141_04241413
gene name CCDC58
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 4238253 ~ 4241413 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_04239141_04241413.mRNA
ATGGCGGCGCCCGGCAGAGTTCTGAACTGTGAGGACTTTTCAATGTTTCAGGAAGTATTAAAAGGGATGCGCACCATAGATGACAGAATTGTCCATGCCCTTAATACCACTGTGCCCACGGTGTCCTTTTCAGGCAAAGTGGATGCCACACAGACCTGCAAAGAACTTTATGAATCTCTCATGGAAGCCCATCTTTCCAGAGATAAGGCAATAAAGTCATGTATTACAGAGACCTCTGCTGTCCTCGGGAAGTTACGTGAAGAGAGGGCAAAAGATAGTGACAACTTGTCAATTATCAAGCAACTCAGGAAAGAACAAACTAAGTTAAAACTCATGCAGTCTGAGCTAAATGTTGAAGAAGTGGTCAATGACCGAAGTCTAAAGGTTTTCAATGAAAGGTGCCGAATTCACTACACCCCTCCTAAGATCAAGTGAATGATAGTTCTGTTGTCAACATGAACCACACAGTTATTCTGAGGACAACACCTGGAGCTGAGCCGGGACATTGAGCACAAACGTCCCTATCTCTCATCCCACAAACCCTCCTCTCCGCCACTCTGTCTGTGGCTTTGTGTTTCTACAGTGAAGGAACACTACTGTTGCCCAAGTGTAAAACTTTTTGTATAAATATTGTACAAAAGATTTTATTAAAAATGAAATGTTTTCCAATTGTTGAAATGTCTGTTATTTGCTTTGCAACACAGCAATGAATGTTCATTTGAAGAGACAATAAGAGTATTGATCTGTTCTCAGATGTTGACATGCCCTCTTGTGTCAAAGGTTAAAGCAGGGGTTTTTATCCACAGATCCCCACACATGATGATCGTCATGCGAGGGACCCCCATCCTAAAATTTAAAAGACCCGTTCTTGTATAAAGACTCAATTTATACTGTGACAATCAAAATATTATTTGGAAAATAGTTAGCTTCTATTCAGGGACATTATTACGTTTAGTCTTTAGTCTATTTATTTAGACTAAAATAATTTTTATTGAGATCTGATTATAATTTTTAGTTTAATATATAGTTTCTATTCAGTTACATTATAACATTTAATCTTTTATTTGTAATCATTTTATTTAAATAAGATTTTATTTTTATCATTTATTTAAATCTAAAATCTTTTAAATCTAAATATTAGTTTCTGTTCAGTTAATTACATTTAATAAAACATTTACATTTTTATTTAAATCAGATTACATTTTTAATTAATCATTTTAATTTATATCTAATATCTTTTAAATCTAAATATTTTGTTTCTATTCAGTTACATTTCATGTAATCTCTTTTTTTATTTAGAACTATGTAATTGCTAAAAATAAA

Function

symbol description
ccdc58 Located in mitochondrion. Orthologous to human MIX23 (mitochondrial matrix import factor 23).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_04239141_04241413.mRNA True 1323 mRNA 0.33 5 4238253 4241413

Neighbor

gene id symbol gene type direction distance location
CI01000018_04231186_04233076 NA coding downstream 5177 4230919 ~ 4233076 (-)
CI01000018_04221457_04229417 NA coding downstream 8836 4221236 ~ 4229417 (-)
CI01000018_04118240_04160401 VIPR1B, VIPR1 coding downstream 77852 4117987 ~ 4160401 (-)
CI01000018_04075425_04081550 NKTR coding downstream 156703 4075405 ~ 4081550 (-)
CI01000018_04041639_04049792 NA coding downstream 188461 4040830 ~ 4049792 (-)
CI01000018_04248388_04258010 KPNA1 coding upstream 6709 4248122 ~ 4258038 (-)
CI01000018_04307560_04321214 QTRTD1, QTRT2 coding upstream 65508 4306921 ~ 4322286 (-)
CI01000018_04336914_04342114 NA coding upstream 95176 4336589 ~ 4342114 (-)
CI01000018_04344907_04359005 GRAMD1C coding upstream 102678 4344091 ~ 4359005 (-)
CI01000018_04361150_04364887 ATP6V1A.L, ATP6V1AA, ATP6V1AB, ATP6V1A coding upstream 119206 4360619 ~ 4364887 (-)
G105185 NA non-coding downstream 118 4234605 ~ 4238135 (-)
G105263 NA non-coding downstream 19344 4218678 ~ 4218909 (-)
G105261 NA non-coding downstream 26995 4210897 ~ 4211258 (-)
G105259 NA non-coding downstream 31116 4206905 ~ 4207137 (-)
G105148 NA non-coding downstream 138096 4099921 ~ 4100157 (-)
G105277 NA non-coding upstream 44326 4285739 ~ 4285992 (-)
G105304 NA non-coding upstream 190778 4432191 ~ 4432482 (-)
G105306 NA non-coding upstream 203389 4444802 ~ 4445367 (-)
G105307 NA non-coding upstream 212848 4454261 ~ 4454478 (-)
G105213 NA non-coding upstream 343215 4584628 ~ 4587775 (-)
G105104 NA other downstream 220436 4007697 ~ 4017817 (-)
G104968 NA other downstream 737739 3482104 ~ 3500514 (-)
CI01000018_02389202_02488018 CNTNAP2, CNTNAP2A other downstream 1837350 2389201 ~ 2488018 (-)
G103842 NA other downstream 2278195 1959497 ~ 1960058 (-)
G105200 NA other upstream 2054 4243467 ~ 4246010 (-)
CI01000018_04856240_04875704 DAP other upstream 613668 4855081 ~ 4876532 (-)
CI01000018_06021105_06025859 NA other upstream 1649923 6020861 ~ 6025876 (-)
G106538 NA other upstream 2289034 6530447 ~ 6533512 (-)
CI01000018_06639339_06649926 NA other upstream 2399199 6639207 ~ 6649971 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_023414 ccdc58 coding NC_007135.7 CM002908.2 20922544 ~ 20926812 (-)