CI01000018_04344907_04359005 (GRAMD1C)


Basic Information

Item Value
gene id CI01000018_04344907_04359005
gene name GRAMD1C
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 4344091 ~ 4359005 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_04344907_04359005.mRNA
TGTCGAATGGCACGTTGCTTCATGAGCTGGTACACTCTGACTGTAAACCTGTTGCCAGGTGTGAGTAGGACAGTCGCAACAACGAGACAGACAACACCGCATATGCTGCTGTCGGAAGTTTATGAGCATTTGGAATATCGGCGACGATTGAAGCTCATGGCGAAAGGCATGACCCAAACACCCAAACAAGTGACGGGCAATGAGCTCACACAGGACAACAATCAGTCTGGGGAAGGCAGATTGACCTTAGAAGAGCAAGAGAGGAGTGACGAGTTTCGGAAGTTATTCAGAGAGATGCCTGAGTCTGAGAAACTAATTGCAGACTACACCTGTGCTCTCCAGAAGGATATCTTGTTACAAGGTCGCATCTATATTACAGGGAATTGTTTATGTTTCTACAGTCATGTTTTTCGTGGTACAAAACTGCTGTTCTGCTCATTCTCAGCAAGGGAGAAAAGTTACCTGAGTATGTTTCGGCTTTGGCAGAATATTTTAATGGAGAAGAAACTGACCAATTCGGAGCTGTTGCAGATAGTCAAGCAGCATTATGGCAACGACTTAGGATTGAGTCATGATGAAATGGAAAGCTTTCAGACATCAGTAGATACTGCCACACCTACCCTGCCCAGTCTGAATATGCGTGGAGAAGATTACACCGGGAGACCAGAGAGGCCCACGTCGCTTCGTCTTCCCCAAGGAGAGATGAATTCTTATGAGGCCACCACACCACAGGGAGACGACACACAGTCTTCAGTTGGACTGCAAAGCATGCTCTCAGCAAATGGAGGGGACGACACTCTCAGTACCCCGTCCCATCAGCGGAGTCCAAATCTGTCATTAAACCGCTCAGGATCTGAACGAGTGTCTAAACGCTCCTCTCACTCTCTGGATCTAAATGCAAATGAAGACCAGCTCTCTGATAACAGCAGATCTGACAGCCTGGAGGAAGTGGAAGAATGTGAGAAGGTGTCTCAGGGAAGGCTGTTTGTGAATCGGGTCTTTCACATCAGTGCTGAGAAGATGTTTGACATGCTTTTCACTGATTCTGATTTCTTGCGGAGGTTTATGCATGTCAGGAAGATCACAGGTGCTCACTCTACCCCTTGGCAAAGGGAGGCCTCTGGCGGTATGAAAAGGACTTTGAACTACACCATCACCATTTCTAACCCCCTGGTCGGCAAGTTCTCCACTGCCACAGAGAACCAGACACTGTATAAAGAGTCACGGGAGGGTCAATATTACATGATCGATGCGGAGGTCTACACACACGATGTTCCCTACCATGACTACTTCTACACTCAGAATCGCTACTGTATCATCCGTAACTCCAAGCACAAGTGCAGACTCAGGATTTACACTGATGTCAAATACAAAAAGCAGCCCTGGGGTCTTGTTAAATCCTTTATCACCAAAAACTCCTGGAGTGGCCTTGAAGACTACTTTAAACATCTTGGTGCCATGGATATAAAGAACACGCCACACAGATGGAACATTACTTCAATTGTAACTGGGATGAGCTTAATACTTTTCGTTCTGGTGGTTCTGAACTTGGGGCTGTTCTTTAAACTTTGGGCCATGGAAGATGTCGCTCACCGTATGTATCTGAACACCAAGCACAGAATGAAGGAGAGAGTAGAGTCCAGCTACGCAGTTCTCTTATGGTGCTTCAGAAGAGCTTTCAGGTCTACAACAGTTCATCCTCTCAGCTTTAAATGCCGTTGGGTTTTGCGACCTGACAACACAAGGGTATTCTTCCCATAAGACATACCCTCACTGAGGAGTGTTGCCATAGGGACAGTCACCCTGGGCAGACTCGTAGCCATGTTCATCATCTCTCTGGGCTTTTTTTGTTGTGGTTGGATGTTTTTTTTAATTGTCAAAGGGGATCTTTGCACTGGTACACTAAATCTTGCAAGTTTCCTCTTGTATTTGTTAACCTGACCTTGAAACGGAAAGAAAAAAGCGACTCTTTTGCTCATTCTTCAGAGTTGATGTTGCTGAAGTGAAAGTAACAGCAATGTAGCAGGTTGAAACACAAAGGGTGACCTCATGTTCTGAACTGTCGGATGCTAATTTGCTGAACAGTTTTTCTGGACTACAACAAAAGCTTTATAAAGCTAAACATTCTCAGATATGTAATGGATTCAGTGCAGTTGCGCAGGTTCTTCACTCTGATTATTGAGGGGGCAGTGCCGGCCAATTGCCTCCAGCTCACATGTAAGAGATCTGCCTAAAATTTACTTGAGTGCCTTTTCTGTCTTGATTTAGATACTGTTCTTGCCTCAAGATACCTCTAAGAATTTGTAAATGATTGCACCTTTAAAACATTATTAATGCAGGGATCATCACTGACAAATGATTGTATGTGTTGAAATTGTAGAATGTTTGAAGTTCTGAATGTTGATCAGGATTTTAATAATGTCTAATGGTACAGGTTCATATGGAGAAGATAATATATCTGACGTTTACTGTAAATGACGAGTGATGATGTTTTACCTATAAATTGTTTACACTTGTCTTTAAATACCACTTTGGTTTGTTCTGCTTTTAGGGACCGTATTGTCACTGTGAAATAAA

Function

symbol description
gramd1c Predicted to act upstream of or within lipid transport. Predicted to be located in endoplasmic reticulum membrane and plasma membrane. Predicted to be integral component of membrane. Orthologous to human GRAMD1C (GRAM domain containing 1C).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_04344907_04359005.mRNA True 2577 mRNA 0.44 15 4344091 4359005

Neighbor

gene id symbol gene type direction distance location
CI01000018_04336914_04342114 NA coding downstream 1977 4336589 ~ 4342114 (-)
CI01000018_04307560_04321214 QTRTD1, QTRT2 coding downstream 21805 4306921 ~ 4322286 (-)
CI01000018_04248388_04258010 KPNA1 coding downstream 86053 4248122 ~ 4258038 (-)
CI01000018_04239141_04241413 CCDC58 coding downstream 102678 4238253 ~ 4241413 (-)
CI01000018_04231186_04233076 NA coding downstream 111015 4230919 ~ 4233076 (-)
CI01000018_04361150_04364887 ATP6V1A.L, ATP6V1AA, ATP6V1AB, ATP6V1A coding upstream 1614 4360619 ~ 4364887 (-)
CI01000018_04397198_04411105 BOC coding upstream 37644 4396649 ~ 4411105 (-)
CI01000018_04464837_04473051 NA coding upstream 105633 4464638 ~ 4473051 (-)
CI01000018_04491510_04539751 ATP8A2 coding upstream 132230 4491235 ~ 4539751 (-)
CI01000018_04557779_04561445 RNF6 coding upstream 198631 4557636 ~ 4561997 (-)
G105277 NA non-coding downstream 58099 4285739 ~ 4285992 (-)
G105185 NA non-coding downstream 105956 4234605 ~ 4238135 (-)
G105263 NA non-coding downstream 125182 4218678 ~ 4218909 (-)
G105261 NA non-coding downstream 132833 4210897 ~ 4211258 (-)
G105259 NA non-coding downstream 136954 4206905 ~ 4207137 (-)
G105304 NA non-coding upstream 73186 4432191 ~ 4432482 (-)
G105306 NA non-coding upstream 85797 4444802 ~ 4445367 (-)
G105307 NA non-coding upstream 95256 4454261 ~ 4454478 (-)
G105213 NA non-coding upstream 225623 4584628 ~ 4587775 (-)
G105199 NA non-coding upstream 253692 4612697 ~ 4615380 (-)
G105200 NA other downstream 98081 4243467 ~ 4246010 (-)
G105104 NA other downstream 326274 4007697 ~ 4017817 (-)
G104968 NA other downstream 843577 3482104 ~ 3500514 (-)
CI01000018_02389202_02488018 CNTNAP2, CNTNAP2A other downstream 1943188 2389201 ~ 2488018 (-)
G103842 NA other downstream 2384033 1959497 ~ 1960058 (-)
CI01000018_04856240_04875704 DAP other upstream 496076 4855081 ~ 4876532 (-)
CI01000018_06021105_06025859 NA other upstream 1532331 6020861 ~ 6025876 (-)
G106538 NA other upstream 2171442 6530447 ~ 6533512 (-)
CI01000018_06639339_06649926 NA other upstream 2281607 6639207 ~ 6649971 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location