XLOC_008258


Basic Information

Item Value
gene id XLOC_008258
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 3382814 ~ 3383114 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018872
GACGACTGCCAACAGCATATATGGCCCTTGTTTTACAGAGGGCACAAGGCAGGACGGGTGGTGTGAGGACACACAGATGTGAAGCTGGTATACAGTCTGGAGTCTTTTAAGcttagtcccttatttatcaggggtcaccacaggggaatgaaccaccaactattccagcatatgttttacacagcggatgcccagacaggacttgaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018872 True 207 lncRNA 0.49 2 3382814 3383114

Neighbor

gene id symbol gene type direction distance location
XLOC_008257 foxo1a coding upstream 3773 3284416 ~ 3379041 (+)
XLOC_008256 LO017656.2 coding upstream 131593 3246475 ~ 3251221 (+)
XLOC_008255 NA coding upstream 142857 3237595 ~ 3239957 (+)
XLOC_008254 NA coding upstream 159366 3219134 ~ 3223448 (+)
XLOC_008253 CABZ01053592.1 coding upstream 181517 3169974 ~ 3201297 (+)
XLOC_008259 FO704837.1 coding downstream 123195 3506309 ~ 3506423 (+)
XLOC_008260 NA coding downstream 144291 3527405 ~ 3529781 (+)
XLOC_008261 LHFPL6 coding downstream 155930 3539044 ~ 3652151 (+)
XLOC_008262 NA coding downstream 210225 3593339 ~ 3595259 (+)
XLOC_008263 CABZ01040556.1 coding downstream 291651 3674765 ~ 3689119 (+)
XLOC_008463 BX663520.1 misc downstream 17869077 21252191 ~ 21252282 (+)
XLOC_008251 NA non-coding upstream 392863 2988791 ~ 2989951 (+)
XLOC_008250 NA non-coding upstream 516885 2865624 ~ 2865929 (+)
XLOC_008248 NA non-coding upstream 527185 2844812 ~ 2855629 (+)
XLOC_008264 NA non-coding downstream 299198 3682312 ~ 3718383 (+)
XLOC_008268 NA non-coding downstream 566766 3949880 ~ 3954691 (+)

Expression


Co-expression Network