XLOC_008268


Basic Information

Item Value
gene id XLOC_008268
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 3949880 ~ 3954691 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018753
gctgaggatcaccagtttgcccacaaatacatgtaaaaattAGGCCTGTCAAAATTAATGTGttaacgcatgtgattaattttaaatattttttaataatattttttatttcctgttgtggccaacGTGTGTTTAGGGATGGTgcgtccatagaggcaacctaggcgggcgccttgggcagcagaatagtgagcgaaccccCCGGCTTCACCTTTATCAGCTACACTGACCCTCTCCCTCACGGTCTTTGCTTTCATCAGCAAAAAGCTGATCATGTTCCAGAGGTAAAGGCCCTGGGGTCCATGCAGCGTCTCATATGGGCTCCCGAAAGCATTGTAAAAGAAGAATCCACAGCACACCGAGGAGAAGACGATGAGCACCGAGCAGAAGAAGATCACGCTCACGTGAAGACTGGCTGGAACCACATCCATCAGgggctgccacagcggaatgaaccagcaactattccagcatatgttttccgcagtgaatgcccttccagccacaacccaggaCTAGgcaacaccaatacacactcatgcacacacactctcatacactaaggccacatttgtttacctaattcagctatagctcatgtgtttggacagaGGGGGAAACCAGCTCGGACTCAAAAcagtgtccttcttgctgtgaggcgacagtgctagccactgagccaccgtgcctctCTCTGGTGTGACACTACATGCTAATTTTAAGTCTGGCATTTTTACTGGCAATAACGGACCCCATTCAAGCCCATGAAGTGCACctgatttttgtctgttttggatccactttaaaatgttttatgttttgtttggtgTTTATTGAAAAATGTCCATCAATCATAGTTAAAAACAAATATGattcattatttcaaatacaaCGAGTAGCACCGTGTCCAGTAATAAAGATAACTCACTCTCACACTATTTGAATATTATTAAGAgttgtttttcttaatttttgctGTCACTTTCTTGGATAATTGTGCTTTAAAGAACTTTATGTTGAC
>TCONS_00018877
gctgaggatcaccagtttgcccacaaatacatGGATGGTgcgtccatagaggcaacctaggcgggcgccttgggcagcagaatagtgagcgaaccccCCGGCTTCACCTTTATCAGCTACACTGACCCTCTCCCTCACGGTCTTTGCTTTCATCAGCAAAAAGCTGATCATGTTCCAGAGGTAAAGGCCCTGGGGTCCATGCAGCGTCTCATATGGGCTCCCGAAAGCATTGTAAAAGAAGAATCCACAGCACACCGAGGAGAAGACGATGAGCACCGAGCAGAAGAAGATCACGCTCACGTGAAGACTGGCTGGAACCACATCCATCAGgggctgccacagcggaatgaaccagcaactattccagcatatgttttccgcagtgaatgcccttccagccacaacccaggaCTAGgcaacaccaatacacactcatgcacacacactctcatacactaaggccacatttgtttacctaattcagctatagctcatgtgtttggacagaGGGGGAAACCAGCTCGGACTCAAAAcagtgtccttcttgctgtgaggcgacagtgctagccactgagccaccgtgcctctCTCTGGTGTGACACTACATGCTAATTTTAAGTCTGGCATTTTTACTGGCAATAACGGACCCCATTCAAGCCCATGAAGTGCACctgatttttgtctgttttggatccactttaaaatgttttatgttttgtttggtgTTTATTGAAAAATGTCCATCAATCATAGTTAAAAACAAATATGattcattatttcaaatacaaCGAGTAGCACCGTGTCCAGTAATAAAGATAACTCACTCTCACACTATTTGAATATTATTAAGAgttgtttttcttaatttttgctGTCACTTTCTTGGATAATTGTGCTTTAAAGAACTTTATGTTGACCAGATTGTAAGATAGTAATATCTTGTATATGAATAGCGATAAAATAAAAACGTGTAAAACTGCAGTGGTAGATGCCATGTGATTTGGGTCATCGAAAATGAAATCGATTTGAGAATTTGGGTGCACCAACCTTTGTTAAAAATGCAAAAAGTTAGCATAGAGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018753 False 1021 lncRNA 0.43 3 3949880 3954528
TCONS_00018877 True 1080 lncRNA 0.44 4 3949880 3954691

Neighbor

gene id symbol gene type direction distance location
XLOC_008267 CABZ01061591.1 coding upstream 23891 3825117 ~ 3925989 (+)
XLOC_008266 CABZ01061592.1 coding upstream 133123 3808996 ~ 3816757 (+)
XLOC_008265 RNF14 coding upstream 145460 3766101 ~ 3804420 (+)
XLOC_008264 NA coding upstream 231497 3682312 ~ 3718383 (+)
XLOC_008263 CABZ01040556.1 coding upstream 260761 3674765 ~ 3689119 (+)
XLOC_008269 NA coding downstream 358400 4313091 ~ 4321015 (+)
XLOC_008270 NA coding downstream 573858 4528549 ~ 4531965 (+)
XLOC_008271 NA coding downstream 599205 4553896 ~ 4554428 (+)
XLOC_008272 si:dkey-35i13.1 coding downstream 678091 4632782 ~ 4635819 (+)
XLOC_008273 rnf169 coding downstream 1014437 4969128 ~ 4985077 (+)
XLOC_008463 BX663520.1 misc downstream 17297500 21252191 ~ 21252282 (+)
XLOC_008262 NA non-coding upstream 354621 3593339 ~ 3595259 (+)
XLOC_008260 NA non-coding upstream 420099 3527405 ~ 3529781 (+)
XLOC_008259 FO704837.1 non-coding upstream 443457 3506309 ~ 3506423 (+)
XLOC_008258 NA non-coding upstream 566766 3382814 ~ 3383114 (+)
XLOC_008278 NA non-coding downstream 1301810 5256501 ~ 5256782 (+)
XLOC_008289 NA non-coding downstream 1513407 5468098 ~ 5471508 (+)

Expression


Co-expression Network