CI01000024_02402657_02417463 (WDSUB1)


Basic Information

Item Value
gene id CI01000024_02402657_02417463
gene name WDSUB1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 2402413 ~ 2418061 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000024_02402657_02417463.mRNA
AGATATAGACTAAATGTTATTATATGCAATTACATATTTATTTACACAAATTAAAATACATTAACGTGTACAAATAAGTGCATAAAAAGTGAAAATGGCTCCACGTAAAATAAGATAACATTTAAATATTTACATAGATAATATTTAAAGCAATCCGATGAAGTGACAACCATATTTATTATGTCTATGGTGACAACCTAAACACGTAACAGTAAACAAAAACCACGTGGTTTGAAAGTCACATGACAGAACCAGGAAGTGTTCGCAAAGGTACGTTATGTCTTCAAACACGATTACACATTATTACATAAACAATGAAAATACATAAAATATATATTTAAATGTAACACTAGATTATTAAACATGATAATGGATAATGTTAGGATACTGTGACTTCAGAGGTATTAAACACGGTTTGCTTAAACAATTGAATAAAAACGCAAATCAATTTTGTAAAATGAAGTGGTTTCACTGTTAAATAATGTGTCTTTTGTTAGAATTAGAAAGGCTAAATGTGAATTACAGTATGTTGTTTTGTCCGTTAAGTAAGTAACTTCCTCGTCTTGTGTATTTAAAGGGACCCGACAACCAGACAAACATGGTGTCTCTGATCTGCACCTTACAAAGTCATCGAGATGATGTGAACTGCTGTGCTTTCTCTGGCTCTCTCCTGGCCACCTGCTCCGCGGACAAAAGCGTCTGCGTTTTCTCCACCCGAGACTTCAGCGAGCTGCCCTTCTCCCCGCTGACCGGACACGGCTACGGGGTCCACTGCTGCTGTTTCAGCGCCTGCGGTCAGTACCTGGCCTCCTGCTCCACCGATGCCACCACCGTGGTGTGGTCGATGGACACCGGAGAGATCGAGGCCGTCCTGGAGCATCCGGGCCGGAGTCCGGTGAGGGTATGCGCCTTCTCTCCAGATTCATCTTACCTGGTGTCTGGAGGCTCCGATGGGACCATCGCACTGTGGGATTTTACTTCCAGGACCCTGCGCAGGACTGGTGCAGTGGCTGACACCAGTATAGTGGCCTGCTCTTTCACTCCCTGCGCTCAGCTGTTCATCACCGGCTCCACATATGGTGACCTGCGACTGTGGGACCTAAATATGAACCATCTCCATGCGGAGAAGAACGCCCATGACCTCGGGGTCTCCTGCTGTCAGTTTGCTCCGCAGATAATGAAGGGCACAGATGGCTGTGTTCAGTTTCAGCTGGCCTCATGTGGACAGGACAGTCTGTTGAAGATATGGATTGTATCTCTTTTGTCTGCTGCAGGCATTAAGATGCAGCTCGCTCACACTCTGACGGGTCAGTCTGCTCCAGTTCTGTCCTGTGCTTACTCTGCTGATGGACAGATGTTGGTGTCAGGATCGGTGGATAAGACCGTGACTGTGTATCAAGCTAACGAAGGCATCTTACTCTACACACTTAACCAGCATGACAGGTATGTGACGGCCTGTGCCTTTTCCCCCACGGCCCCTCTTATAGCCACTGGCTCCATGGACAAAAGCGTTAATATCTGGAGGGTTGAGGATTGCAGCTGTGCTCAGGATGAAGCTGCTTCAGTTTCAAGCAGTGAAGGCAGGAAGTCGTGTGGACGCTCCAGACTGATGGTGAGCGAGTGGTCTGAGGAGGATGTGTTGGCATGGTTACGTGAGGAGGGGCTGGAGTCCGTGATTGACGTGTTTAAATCCAATAACATCGATGGAGAGGAGCTTCTCTCTCTCACCAAGGAAACCCTCAGCTCTGAGCTGCACATTGAGTCTCTGGGCCTGCGGAGTAAAGTCATGAAGAAGATTGAGGAGTTGAAGATGGCACCCGTCTCTAATGGCACTCCCGACGAGTACCTCTGTCCAATCACACACGAGATCATGAAGGACCCAGTGATCGCTGCTGACGGCTACTCGTATGAACGGGAGGCCATTGAGAGCTGGATCAACTCGAAGAGCCGCACCAGCCCTATGACCAACCTGCCTCTGCAGACCACCCTTCTGACACCCAACCGTACTCTGAAAATGGCCATTTTCCGATGGACCACTGGTCAGTTTGAATACAGGTGAAATTCTTCAGCTGATTCAGTCTTATTTCATAAAATGATTTTGAGATTAGCTATTTATCATTTAAGGGTATAATGTTGCTTGTATGAAAGTTTACATACTTAAAATCAGGTATGCATTTATTAGTGGATGCTCATTGTAACCAGTTCAGTGACTAAATTGCATGGCTTTACTATGTAACCATATGTATATTACTGTACATAAGATCATTGTTATGAGACCTGTCTGATGAACATGCAGCAATAAA

Function

symbol description
wdsub1 Predicted to enable ubiquitin-protein transferase activity. Predicted to act upstream of or within protein ubiquitination. Orthologous to human WDSUB1 (WD repeat, sterile alpha motif and U-box domain containing 1).

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000024_02402657_02417463.mRNA True 2303 mRNA 0.45 12 2402413 2418061

Neighbor

gene id symbol gene type direction distance location
CI01000024_02249593_02250941 NA coding downstream 151319 2249593 ~ 2251094 (-)
CI01000024_02170481_02175158 NR4A2, NR4A2A, NR4A2B coding downstream 227255 2169743 ~ 2175158 (-)
CI01000024_02131229_02148749 STK24, STK24B coding downstream 253593 2131151 ~ 2148820 (-)
CI01000024_01955762_01966845 FAM117BA coding downstream 435568 1953804 ~ 1966845 (-)
CI01000024_01922262_01923329 CXCR4A coding downstream 479084 1921891 ~ 1923329 (-)
CI01000024_02421600_02456292 BAZ2B coding upstream 3539 2421600 ~ 2456292 (-)
CI01000024_02484606_02498687 NA coding upstream 66148 2475874 ~ 2503657 (-)
CI01000024_02555602_02562403 ZSWIM2 coding upstream 137222 2555283 ~ 2562932 (-)
CI01000024_02597194_02605289 NA coding upstream 178690 2596751 ~ 2605289 (-)
CI01000024_02659912_02681156 NA coding upstream 241599 2659660 ~ 2684099 (-)
G123169 NA non-coding downstream 135438 2266289 ~ 2266975 (-)
G123165 NA non-coding downstream 138702 2262793 ~ 2263711 (-)
G123163 NA non-coding downstream 140408 2261803 ~ 2262005 (-)
G123159 NA non-coding downstream 181340 2220768 ~ 2221073 (-)
G123158 NA non-coding downstream 181749 2220370 ~ 2220664 (-)
G123223 NA non-coding upstream 105627 2523688 ~ 2523961 (-)
G123230 NA non-coding upstream 110227 2528288 ~ 2529219 (-)
G123232 NA non-coding upstream 111990 2530051 ~ 2530306 (-)
G123229 NA non-coding upstream 117276 2535337 ~ 2538084 (-)
CI01000024_00825386_00837898 NA other downstream 1575562 824968 ~ 838550 (-)
G123233 NA other upstream 129399 2547460 ~ 2555036 (-)
CI01000024_03938368_03941795 NA other upstream 1517981 3938315 ~ 3941924 (-)
G125457 NA other upstream 4939176 7357237 ~ 7358104 (-)
G125798 NA other upstream 5557606 7975667 ~ 7976047 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_031899 wdsub1 coding NC_007117.7 CM002890.2 12006557 ~ 12032704 (+)