Gene
RNA
| Item | Value |
|---|---|
| gene id | G123159 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000024 |
| NCBI id | null |
| chromosome length | 8644187 |
| location | 2220768 ~ 2221073 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU139832 | True | 306 | lncRNA | 0.43 | 1 | 2220768 | 2221073 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000024_02170481_02175158 | NR4A2, NR4A2A, NR4A2B | coding | downstream | 45610 | 2169743 ~ 2175158 (-) |
| CI01000024_02131229_02148749 | STK24, STK24B | coding | downstream | 71948 | 2131151 ~ 2148820 (-) |
| CI01000024_01955762_01966845 | FAM117BA | coding | downstream | 253923 | 1953804 ~ 1966845 (-) |
| CI01000024_01922262_01923329 | CXCR4A | coding | downstream | 297439 | 1921891 ~ 1923329 (-) |
| CI01000024_01882305_01892725 | MCM6 | coding | downstream | 326852 | 1881911 ~ 1893916 (-) |
| CI01000024_02249593_02250941 | NA | coding | upstream | 28520 | 2249593 ~ 2251094 (-) |
| CI01000024_02402657_02417463 | WDSUB1 | coding | upstream | 181340 | 2402413 ~ 2418061 (-) |
| CI01000024_02421600_02456292 | BAZ2B | coding | upstream | 200527 | 2421600 ~ 2456292 (-) |
| CI01000024_02484606_02498687 | NA | coding | upstream | 263136 | 2475874 ~ 2503657 (-) |
| CI01000024_02555602_02562403 | ZSWIM2 | coding | upstream | 334210 | 2555283 ~ 2562932 (-) |
| G123158 | NA | non-coding | downstream | 104 | 2220370 ~ 2220664 (-) |
| G123157 | NA | non-coding | downstream | 413 | 2220065 ~ 2220355 (-) |
| G123152 | NA | non-coding | downstream | 8349 | 2211954 ~ 2212419 (-) |
| G123120 | NA | non-coding | downstream | 127552 | 2091484 ~ 2093216 (-) |
| G123112 | NA | non-coding | downstream | 134129 | 2080654 ~ 2086639 (-) |
| G123163 | NA | non-coding | upstream | 40730 | 2261803 ~ 2262005 (-) |
| G123165 | NA | non-coding | upstream | 41720 | 2262793 ~ 2263711 (-) |
| G123169 | NA | non-coding | upstream | 45216 | 2266289 ~ 2266975 (-) |
| G123223 | NA | non-coding | upstream | 302615 | 2523688 ~ 2523961 (-) |
| CI01000024_00825386_00837898 | NA | other | downstream | 1393917 | 824968 ~ 838550 (-) |
| G123233 | NA | other | upstream | 326387 | 2547460 ~ 2555036 (-) |
| CI01000024_03938368_03941795 | NA | other | upstream | 1714969 | 3938315 ~ 3941924 (-) |
| G125457 | NA | other | upstream | 5136164 | 7357237 ~ 7358104 (-) |
| G125798 | NA | other | upstream | 5754594 | 7975667 ~ 7976047 (-) |
