CI01000024_02829108_02838763 (ATG9A)


Basic Information

Item Value
gene id CI01000024_02829108_02838763
gene name ATG9A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 2828646 ~ 2839196 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000024_02829108_02838763.mRNA
ATTGTTTGCATTGTTTGTTTCTGAGAGATTGGCATATTTGACAAAGCCGTCAGACTAGTCCAGCACTTGTTTTAAAACTGCTCACGTAATGGCAACAACATCCAGTGATTTAAACATTGTTTTGGGTGTGTATGTTATTTTATTCTTATACTGTGAGTCATATGCACGTTTATAATGAGCGTGGGCCCACTACTGTTGCGCAATGAGGTCTCTGCTGGAGAGTCCTGACATGTTTTTGTGGGCTGGGTATTTTTTTAAGTACAGTCTCTCACGTTCATATGTATTTAAATGACCTTAAAGACAAATTAGACCACATATATTCAATCATGTTTTGTATCATATAATGATACAGTGCTTATTATGAAATAAGTGTTCTTTTAATCCACAGGCACAAGAATAGTGTGTGACAGGAGATTTGGGGTCTGACAGCGGGATGGCCCACTTTGATACAGAGTACCAGCGCCTGGAGGCGTCCTACAGCGACTCCCCTCCTGGAGAAGAGAATCTACTGGTGCATGTTCCAGAGGGATCTAAATCTGTGCACGCGCAAGCGATGCGATTTCACATTTACGAGCACCTCTTGCACACTACTATCGCCACTGCCATTTGCCGCTGTTTGTCTCACATTGAAAATGAACTGACTTGCGCTTTCCGTGTCCTGTGTGAAACTGCCTTTATGTCGAAGTGGCAACTGGTGTTTGTGGTGGCATTCACAGTGTTCCTGGCTAACTGTGTGGACTATGACATCCTTTTTGCCAACAAGTTTGTTAATCACACTGATTCCTCAAAGGTTACGCTGCCCGATGCGTTTCTACCAGTGGACGTGTGCAGTGCTCGGATCCGTGACAGTGTTTTGGTCATCTTCATCCTTGTCATATCAGGGGTATTTTGGCTCCACCGTCTCGTCAAGTTCATCTACAACATCTGTTGCTACTGGGAGATCAGATCATTTTACATCAGTGCCCTAAAAATGTCCATGACGGACCTTCCTTATTTCACCTGGCAGGAGGTGCAGGCAAGGATTGTTGAAATACAGAAGGAGCACCAGATTTGCATCCACAAAAAAGAACTATCAGAGCTTGACATCTACCATCGCATACTGCGTTTCAAAAACTACATGGTCGCAATGATCAATAAGTCACTTCTACCTGTGCGCTTTCGTTTGCCTCTGCTGGGCGACACCGTTTTTTACACCCGTGGCCTCAAGTATAACTTTGAGTTGATTTTCTTCTGGGGCCCTGGATCTCTTTTTGAAAATGAGTGGAGTTTGAAGTCAGAGTACAAACGTGGAGGGAACCGTTTAGAGCTAGCAGATCGTCTGAGCTCACGGATCTTGTGGATTGGAATTGCCAACCTTCTCTTGTGTCCAGTTATCCTGATTTGGCAGATTCTCTACGCGTTCTTCAGCTACACTGAGGTGATCAAGCGTGAGCCGGGAAGCCTGGGTGCTCGATGTTGGTCTCTGTATGGCCGTTTTTACCTCCGACACTTCAATGAACTAGACCATGAGCTGATGTCACGCCTCAGCAAGGGCTACAAGGCCTCCTCGAAATACATGAACTGCTTCATGTCACCATTACTGACGGTGGTGGCCAAGAACGTGGCATTCTTTGCTGGCTCCATACTTGCAGTTTTGATTGCTTTGACTATTTATGATGAAGATGTATTGGCTGTGGAACACGTGCTCAGCAGTATCACATTACTTGGGGTCTGCATCACAGTCTGCAGGTCGTTTATCCCAGACAAGCATATGGTGTTCTGTCCAGAACAGCTGCTTAAAGTGATCCTGGCACACATCCACTACATGCCTGATCACTGGCAGGGTAATGCCCACCGCTATGAGACCAGAGATGAGTTCGCACAGCTCTTTCAGTACAAGGCTGTGTTTATTCTTGAGGAGCTTTTGAGTCCTGTCATCACTCCCTTCATTCTCATTTTTTGCTTGCGCCGCAAATCTCTGGAGATCATCGATTTTTTCCGAAACTTCACTGTGGATGTGGTCGGTGTCGGTGATACTTGCTCTTTTGCACAGATGGATGTCCGTCAACATGGTCATCCTGCATGGATGTCTGCTGGGAAAACAGAGGCCTCCATCTATCAGCAGGCAGAAGATGGGAAGACAGAACTGTCACTCATGCATTTTGCGATCACAAATCCACACTGGCAGCCCCCTCGGGAGAGCACACATTTCATCAGTCTTCTGAAAGAGAAGGTGTACCGTGAGGCCGCCGGAGGACAGCAGGGAGTCATAGCAGAGAATCCTGTCTTTACCTCAACACATTCATTACAGTCTGATTCAGAGCCTCGCAGTCTTATTGCAAATCTTCTTATCGGACCCCCTTCTCTGGCCTCGTTGCATCTGGGTCGAGAGGGCTCCATCAATCCTGTGTCCATTGGAGTGAGTGAGGGAGCATCTGCTCTCCGATCCCTCTCTCCTCTCAGCACGAGTCTACACCTCCGAGGCAGCTACCCATCTGCCAGACTGCCACGACCGGATCATCCAGCTGTGGTGGCTGGGCGAGCAATGACAGGCTCTAGCACTGATGCCCGTACCATCAGCTCTGGCAGTAGTGCCTGGGAAGGCCAGTTAACCAGTATGGTCCTATCAGAATATGCCTCCACAGAGATGAGCATTCATGCTCTCTACATTCATGAGATGCATAAGCAGCAATCGCGAGGTGAGCTGTCTCGACACACCTGGCACCGACAGGAGAGTGACGAGAGCAGTGAGAGTGTCAATGAAGACGTGGAAGCTGCTCGCAACTTCCCTCGTTCCAGCACTTTCCCTTGTGCCTCCACCTCACACCAGCAGGGGGAAGCACAGCAGAGCGGCAGCCAGCGGCGCTTCGGCGGAACCTCAGATCCTGTTTCTGGAAGCTTTCGAGTCCAGAGGACACCTCGTATGCCTATGGGTGGCTGGTCTGAGGAGAACCAAATGGGCCGGCATCATGACCCAGTGCCTGAGGAGGGGTCTGAGGACGAGCTACCACCACACATCCATAAGGAAAGTCTATTTGCAAACTGGACTAAGCAGCTGACAGAAAGCCTTCCCATTAGTCCTTCGAGTAAACGGTCTAGTAGGATTGCGCTCAGCTGACCTTGACTTTTCTGTTCTCGTCAAAAAGTACAGGTCGGTGTTGATGTAAGAAGTTTGTGCTTAGAATTTCTGAGCTACTTTGAATAGTTTTCATAGGATGAAGAAATATTTATAACATGCACTGTGCCATTATGAACTTTAACGCTTTGCAAAATTAGATTTTATTGTCAAACCCAGATTTCTGTGAGGAGGAAAAACCACTGAAGATCAGTCAAGCATGGCACTGTAAAAATAATGCATGCGCATGATCTTAAGTTTTATTATTTGCACAATATCAAACAAGAATGCACTTTATCATTTTTCAGATCCAAAGGATGACTCAAAGGCAGTGGGCAAATCAGATTTCTTGTCTTTAAAAACATGCAGTTATAAAGGAAGTTGTATATTTCTGTCTATAGGATAAAACCCTGGGATTTTGTCAGTAACATTTTCAGTTTATTTACCATGGCTCAGGTGAATAAA

Function

symbol description
atg9a Predicted to be involved in autophagy of mitochondrion; late nucleophagy; and protein localization to phagophore assembly site. Predicted to act upstream of or within autophagy and protein transport. Predicted to be located in Golgi apparatus; autophagosome membrane; and cytoplasmic vesicle membrane. Predicted to be integral component of membrane. Predicted to be active in autophagosome and phagophore assembly site. Orthologous to human ATG9A (autophagy related 9A).

GO:

id name namespace
GO:0000407 phagophore assembly site cellular_component

KEGG:

id description
K17907 ATG9; autophagy-related protein 9

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000024_02829108_02838763.mRNA True 3559 mRNA 0.47 13 2828646 2839196

Neighbor

gene id symbol gene type direction distance location
CI01000024_02771915_02777060 NA coding downstream 51586 2771806 ~ 2777060 (-)
CI01000024_02761265_02771248 NA coding downstream 57398 2760852 ~ 2771248 (-)
CI01000024_02712596_02739960 COL5A2, COL5A2B coding downstream 88686 2711873 ~ 2739960 (-)
CI01000024_02659912_02681156 NA coding downstream 144547 2659660 ~ 2684099 (-)
CI01000024_02597194_02605289 NA coding downstream 223357 2596751 ~ 2605289 (-)
CI01000024_02849288_02866286 NA coding upstream 9904 2849100 ~ 2866404 (-)
CI01000024_02939122_02964449 ABCC6A coding upstream 99187 2938383 ~ 2964449 (-)
CI01000024_03048421_03049271 NA coding upstream 208968 3048164 ~ 3049529 (-)
CI01000024_03060967_03068650 MTX2 coding upstream 221616 3060812 ~ 3069706 (-)
CI01000024_03208565_03262749 KCNH7 coding upstream 369369 3208565 ~ 3262749 (-)
G123313 NA non-coding downstream 33824 2794420 ~ 2794822 (-)
G123326 NA non-coding downstream 34378 2793903 ~ 2794268 (-)
G123318 NA non-coding downstream 35428 2793014 ~ 2793218 (-)
G123340 NA non-coding downstream 35880 2792337 ~ 2792766 (-)
G123319 NA non-coding downstream 36972 2791446 ~ 2791674 (-)
G123439 NA non-coding upstream 113340 2952536 ~ 2952774 (-)
G123446 NA non-coding upstream 131319 2970515 ~ 2970722 (-)
G123447 NA non-coding upstream 131605 2970801 ~ 2971023 (-)
G123449 NA non-coding upstream 139613 2978809 ~ 2979011 (-)
G123233 NA other downstream 273610 2547460 ~ 2555036 (-)
CI01000024_00825386_00837898 NA other downstream 2001795 824968 ~ 838550 (-)
CI01000024_03938368_03941795 NA other upstream 1096846 3938315 ~ 3941924 (-)
G125457 NA other upstream 4518041 7357237 ~ 7358104 (-)
G125798 NA other upstream 5136471 7975667 ~ 7976047 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00019174 atg9b,LOC106599848,LOC107100460,LOC106569346 coding CM030124.1 CM030124.1 6869514 ~ 6897553 (-)