CI01000024_02939122_02964449 (ABCC6A)


Basic Information

Item Value
gene id CI01000024_02939122_02964449
gene name ABCC6A
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 2938383 ~ 2964449 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000024_02939122_02964449.mRNA
GCAAAGGGGGAGAGGACTATGTTAAGGGTGGTGTCTATGTTTTTCGGGTGGTGTCAGAGAACTTTGCAAAACCACATTACTGTTTTGATAAAGAACCTAAAATACGTGGGAGTTGGGGAAAGAGGAAGATAAATAGAGAAGGAGGGAGAGTCAGAGAGTTTAAAGAAGACTGCTGGGAGGAGAGAGTGAATATAACCACCCACCTAAGCAGCTGTCAGACTGGTGGTCAAAAAGCAGACACTTCCAGACACTCTCAGAAACAAGGAGTGACAAAAGACTGGAACCAGACATGGTACACGCATAACCCTGAACTGAGCAATTGCTTCCAGAACACAGTCCTGGTGTGGGCTCCATGCATCTACCTGTGGGTCCTCTCTCCATTCTACTGCCTTCATCTGTACTGCCACGGCCGAGGTCGGCTGCCCCTCTCTTCACTCTGCAATGCCAAGCTGTTGTTGGGGTTCTTCTTGGCATCCTTTGGTTTTGTGGAATTCTTCTACATCCTGTTGGAACGAAGACAGGAAATCCAGCAACACCTTGTCTTCTTGCTCAGTCCCATCATACGCAGTCTCACTGTGGTGTTAGCCGTGTGCGTGATTCATTGGGAGAGAGTGCGCGGATGCCGTTCCTCTGTCTTCCTGTTCTTCTTCTGGCTGCTGGGCGTGGTCTGTTCCCTTATTCCACTTCATGCAAAGGTCCAGCTGACTGTGGAGCAGGGTCTTTCTCCAGATATTGTGCGGTATTTGGCCTTTTTCTCTCACTTCACCCTGCAGTTGGCGCAGCTCTTCCTCAGCTGTTTTGCAGACCGGGCACCCTCAGGCAAAGCCGTCCTCAAGAATGCGTGTCCTGTTGAAGATGCATCGTTCTTGTCCAAGATCCTCTTCTGGTGGTTTAGCGGGTTGGTTTTTAAAGGATACCGTTCTCCTCTGCAAGCAGAGGATCTGTGGACTCTGAGGGAAGAGGATACATCAGATAGGATCATATCCGACCTGGAAGAAGAATGGACAGCGGAGCGTACCAAATTACAGCAGCAGGAGAACCACCTAAGCACCAGTGTTGCCTTGGGATCTCGACTACCAGACCAGGCCCAACTCCTCAGGAAGATTCAAAAAGAGCAGAGTTCGGGATTCTGTCTCTTACGGACACTTGCGCGTAGCTTCGGACCCTACTTCCTAACCGGGACGCTATGCCTCATGGTCCATGATGCCTTCATGTTTTCAGTTCCACAGGTTCTAAGTCTGTTGTTAGGATTTATGAAGGATGAGGATGCTCCACTGTGGAAGGGTTATTTCTATGCCTCTCTTATGTTCCTCCTGTCCTGCCTGCAGTCTGTCTTCAACCACCAGTACACATACACCTGCTTTACTGTGGGCATGAGGGTTAAAACAGCTGTCATGGGTCTGGTCTACAGAAAGTCTCTTGTCGTGAATAGCGCAGCACGCAGAACATGCACAGTGGGGGAGATAGTCAATCTGGTCTCTGCTGATACCCAGAAGCTGATGGATTTTGTGGTGTATTTCAATGCAGTGTGGCTGGCACCCATTGAGGTCACACTCTGTCTCTTCTTTCTCTGGCAGCATCTAGGACCATCAGCTCTAGCGGGCATCGCCACCGTGATCTTCATCTTCCCTCTGAATGGATTCATTGCAAGGAAGAGAAGCAAACTCCAGGAGATACAAATGAAGTACATGGATGGACGGGTCAAGTTAATGAACGAGATTCTGAATGGCATCAAGATCTTGAAGTTCTACGCCTGGGAAAAGGCTTTTCTGGAGCAGGTCCTGGGATACAGAGAGAAGGAGCTTAAAACTCTGAAGAAATCACAGATCTTATACTCTGTGTCTATTGCCTCATTTAACTCCTCGTCCTTTCTGGTTGCTTTTGCCATGTTTGGTGTCTATGTGCTTATTGATGATAAGAATGTTCTGGATGCTCAAAAAATCTTTGTATCAATGGCTCTCATCAACATACTGAAAACTCCGCTAAGCCAGCTTCCTTTTGCCATGAGCACAACCATGCAGGCTCTCGTCTCTCTAAAGCGTCTGGGGAAATTTCTCTGTCAAGATGAAATCAAACCAGACAATGTGGCAAGAGAATCCTTTAAATCCGATGTGGATGGTGTGGTGTTTGAGAATGGAACCTTCAGCTGGTCTAAGGATGGCCCCCCATGTCTAAAAAGTGGGAAATCCTCGCTGCTTTCAGCCATACTTGGGGAGACTGAAAAAAGAAGTGGGGCCGTCTCAGTAAAGGGCTCCATTGCCTACGTTCCCCAGCAAGCTTGGATCCAAAATGCCAGTCTGCAGGACAACATTCTGTTTGGACGGGAAAAAAAGGAAAGCTGGTACCAGCGAGTGCTGGAAGCCTGTGCCCTGCTGCCAGATCTGGATAATCTGCCTGCAGGAGACGCCACTGAGATCGGAGAGAAGGGTTTAAATTTGTCTGGAGGACAGAAACAGCGGGTGAGCCTAGCACGTGCTGTTTACAGGAAAGCTGACGTGTATCTGCTTGATGACCCCCTGTCTGCTGTGGATGCACATGTTGGTCAGCACATCTTCAACAAAGTCATTGGGCCCAAAGGCATACTTAGAGACAAGGTGACTATCACTGTAAAGTTTACCTTACACATGGAGTATGGGACACGGGTTTTGGTGACCCACGGAATGAGCTTCTTGCCTCAGGCGGATTTGATTCTGGTTCTGGTGGACGGGGAGATCAGTGAGAGAGGCTCCTATCAAGAACTTTTGAACCGGAATGGTGCTTTTGCTGATTTCATCCACACCTTCGCAAGCTCTGAAAGGAAAGATGGTGACACAAACAGCATTACAATTGAGCCACTACCTGATTCTGATGAGGACCGCAACCCAGAAGACCTGGGGAAACTGACAAATGTCGATAAAGCACGGATAGGCAGAGTCAAACTTGAGATGTACATTGAATACTTCCGCACTATTGGTTTGCCTTTGATAGTTTCAATTGTATTCCTGTACGCCATCCAACAAGCAGCATCTCTGTCTAATAACTACTGGTTAAGCCTGTGGGCTGATCAACCTGTGATCAACGGCACTCAGTTAAACACAGATCTGAAACTTGGAGTCTATGGAGCTCTCGGCTTTGCACAAGGAATTGCCATATTTGGTACCACGGTGGCCATCTCATTAGGGTGTATCGTCGCCTCCCGTCATCTTCACTTGGAACTTCTGAACAACGTCCTTCACTCCCCGATGTCGTTCTTCGAGTCCACTCCCAGCGGAAACCTCCTCAATCGTTTTGCTAAAGAGATAGATGCCATAGATAATATGATCCCAGATGGGCTAAAGATGATGCTAAGTTACTTCTTCAAACTCTTGGAAGTCTGTATCATTGTGTTGATGGCCACTCCTTTCGCTGCTATTATCATCCTCCCTATGGCATTACTCTATGGTTTCATACAGAGTTTCTACGTGGCCACTTCCTGCCAGCTGCGGCGGCTGGAGTCAGTGAGTCGCTCTCCCATCTACACGCACTTAAACGAGACTGTGCAGGGTGCCAGTGTCATCCGGGCGTTCAGTGAGCAGTCACGCTTCATCATGGGTGCCAATCACAAGGTGGATCTTAACCAAACTGCTTACTTCCCCCGTTTCGTAGCCACAAGGTGGCTGGGTGTGAATTTGGAGTTCCTGGGTAATGGCATTGTTCTTGCTGCTTCTATTCTCTCTGTGATGGCAAAAGGAACCCTGAGCCCTGGTATGGTCGGTCTGGCCGTGTCTCATTCACTTCAGGTAACAGGTTTCCTGAGCTGGATTGTAAGGTCATGGACAGATGTAGAGAACAACATTGTGTCAGTCGAGAGAGTGAAAGAGTACGCAGACACACCAAAAGAGGCAGCTTGGAGCATAGAAGGAAGTTCTTTGCCACCATCTTGGCCTCAAACAGGAACCATAGAGTTTCAAGATTATGGCCTTCAATATCGTAAAGGCCTTGAGCTGGCCCTGAAGGGCATCTCTGTTCACATCCAGGAGCGGGAGAAGATTGGTATTGTGGGAAGAACTGGCGCAGGAAAGTCATCTTTGGCTCTTGGAATTTTCCGGATCTTGGAAGCAGCGAAAGGAGAGATCTACATCGATGGAATCAATATTGCAGAGATCGGGCTTCACGATCTAAGATCCCGCATTACCATCATTCCACAAGACCCAGTGCTGTTCTCTGGATCTCTCCGTATGAACCTTGACCCCTTCGATGCCTATTCTGATGAGGAGGTGTGGAATGCCCTGGAACTGGCTCACCTTAAAAACTTTGTGTCTGAACTTCCAGATAAACTCAATCATGAATGCTCAGAGGGAGGTGAAAACCTCAGTCTTGGTCAGAGACAGCTGGTATGTCTAGCAAGAGCTCTTCTTCGAAAGACTAAAGTTCTGGTGCTGGATGAGGCTACAGCTGCACTGGACCTGGAGACAGACACCCTGATCCAGTATACCATCCGCAGCCAGTTTGAGGATTGCGCTGTTCTCACCATAGCACATCGCCTCAATACCATTATGGATTACACAAAGGTTATTGTTATGGATAAAGGACATATCGTGGAGATGGATTCTCCCAATAACCTTATTGCAAAGAGAGGCCAGTTTTACTACATGTGCCGAGAAGCTGGGCTCTTGTAAGACATCCGCTGTCTTCTCGTGCCCCCTTGTGGTGAAAGCAAAGAATCTGCAGACTCTCTATTTCTCAGTGCAGAACACAGAGACATCCCAATAACACAGCTGGTGCTTCACGAGGGAAAAAGACCAGACACTTGAATTACACTTTTCCCCACAAATGAAAATGGTTTGCTTGATAAATCTAAATTGAAGCTAAGATGTAAGGGTTTACTCAGGTTTACTGTCATCTCTATGGGCATAGTAGTTCCATGCAGCTCTTAAGAGGAATGAGGGAAAAGCCTTTGCATTCCTGCATTCTGCCAGAAGTCTGGTGCTTTTAGTGTTCAGTGGAAAGGTGTAGCTGATGGAAACCTGTACATTTTGCACCTAATTAAACAGACACGAAACAATTAGGGAAGAAAGTGTCTGTGCCATAGCACCCATGGTGAAAGAACATGAATGTGAATAGCTAATTGTTTTACAGTTAACTTTGGTTTTATAACAAATCAATGAAGACAATTCTATAAGCTCTAGTGGTTTCATAGCTCTCTTCATAGACAGTTATGTGAAGAATCGTGTAAAAGAGGACAAATATGTTTACAAACATATTGCCACACATACTTGACCTGAAATTCCCTAAAAAAATTCCAGACTTGCTTTCAGACACTAATTAAAGCTTTACGAGAGGATTTAGGGAGAAAAACAGTAGTCACCCAAGTAGGTTGTGGTGTTTGTTCATTTTCAGCCAAAGTAAACAAATAAA
>TU140133
TAATTTTCTCACTCCTCAGAATTTCCAACATCTAACATTCAACATTTTCATTAAAGACACGGGTTTTGGTGACCCACGGAATGAGCTTCTTGCCTCAGGCGGATTTGATTCTGGTTCTGGTGGACGGGGAGATCAGTGAGAGAGGCTCCTATCAAGAACTTTTGAACCGGAATGGTGCTTTTGCTGATTTCATCCACACCTTCGCAAGCTCTGAAAGGAAAGAGTGCGTTACGGAGGACTTCCAGAGAGGTAATATGTTGCGGATGCTAGTTTCCCCATCATGCTTTTAACTAGTTTAACCAGGGGATCAAGCTACACTGTCTGGCAAAGTTTTTTTTCTGGTGAACAGC
>TU140139
GGAAAGTCTGCCTATGCTCTCTCTTTTTAATCTGTATGTGATCCGCTGTTTTTCAGGGTCTTTCTCCAGATATTGTGCGGTATTTGGCCTTTTTCTCTCACTTCACCCTGCAGTTGGCGCAGCTCTTCCTCAGCTGTTTTGCAGACCGGGCACCCTCAGGCAAAGCCGTCCTCAAGGTACGAACGGAGCGAACTCTTATCAACTAAAATAATCCATCAACAACAATCCTGCGGTGTTTACTTCTGTCTTTATGTAATATACAACTCAACCCCCCCATTTTGAAGTGAATTATGGTAATGGCGGTGGCACATCCA

Function

symbol description
abcc6a Predicted to enable ATPase-coupled transmembrane transporter activity. Acts upstream of or within chordate embryonic development and regulation of bone mineralization. Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in Kupffer's vesicle; forerunner cell group; opercular flap; and tail bud. Human ortholog(s) of this gene implicated in arterial calcification of infancy; coronary artery disease; and pseudoxanthoma elasticum. Orthologous to human ABCC6 (ATP binding cassette subfamily C member 6).

NR:

description
Multidrug resistance-associated protein 1

GO:

id name namespace
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG:

id description
K05665 ABCC1; ATP-binding cassette, subfamily C (CFTR/MRP), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000024_02939122_02964449.mRNA False 5376 mRNA 0.47 30 2938383 2964449
TU140133 False 350 lncRNA 0.45 1 2945146 2945495
TU140139 True 314 lncRNA 0.46 1 2955936 2956249

Neighbor

gene id symbol gene type direction distance location
CI01000024_02849288_02866286 NA coding downstream 71979 2849100 ~ 2866404 (-)
CI01000024_02829108_02838763 ATG9A coding downstream 99187 2828646 ~ 2839196 (-)
CI01000024_02771915_02777060 NA coding downstream 161323 2771806 ~ 2777060 (-)
CI01000024_02761265_02771248 NA coding downstream 167135 2760852 ~ 2771248 (-)
CI01000024_02712596_02739960 COL5A2, COL5A2B coding downstream 198423 2711873 ~ 2739960 (-)
CI01000024_03048421_03049271 NA coding upstream 83715 3048164 ~ 3049529 (-)
CI01000024_03060967_03068650 MTX2 coding upstream 96363 3060812 ~ 3069706 (-)
CI01000024_03208565_03262749 KCNH7 coding upstream 244116 3208565 ~ 3262749 (-)
CI01000024_03284853_03286057 NA coding upstream 319761 3284210 ~ 3286057 (-)
CI01000024_03311028_03319956 NA coding upstream 346548 3310997 ~ 3319956 (-)
G123313 NA non-coding downstream 143561 2794420 ~ 2794822 (-)
G123326 NA non-coding downstream 144115 2793903 ~ 2794268 (-)
G123318 NA non-coding downstream 145165 2793014 ~ 2793218 (-)
G123340 NA non-coding downstream 145617 2792337 ~ 2792766 (-)
G123319 NA non-coding downstream 146709 2791446 ~ 2791674 (-)
G123446 NA non-coding upstream 6066 2970515 ~ 2970722 (-)
G123447 NA non-coding upstream 6352 2970801 ~ 2971023 (-)
G123449 NA non-coding upstream 14360 2978809 ~ 2979011 (-)
G123459 NA non-coding upstream 45579 3010028 ~ 3018735 (-)
G123463 NA non-coding upstream 62252 3026701 ~ 3028568 (-)
G123233 NA other downstream 383347 2547460 ~ 2555036 (-)
CI01000024_00825386_00837898 NA other downstream 2111532 824968 ~ 838550 (-)
CI01000024_03938368_03941795 NA other upstream 971593 3938315 ~ 3941924 (-)
G125457 NA other upstream 4392788 7357237 ~ 7358104 (-)
G125798 NA other upstream 5011218 7975667 ~ 7976047 (-)

Expression


Co-expression Network