CI01000024_07308822_07327683 (GAD1B, GAD1, GAD1A)


Basic Information

Item Value
gene id CI01000024_07308822_07327683
gene name GAD1B, GAD1, GAD1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 7306385 ~ 7327683 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000024_07308822_07327683.mRNA
CCTGCGACGCGTGGTACGGGGTTGCGCACGGATGCACGAGGAAACTTGGCATGAAGATATGTGGTAAGTTACAATGCCAACATCATTTCAGTCTCCAAAGGGCGCATGGGGTCACTCAAGGTTTCCTGCAGAAGAACAACAGTCTGGATGAGAAGAGTCGTATGGTGGGCGCCTTCAAGGAGAGCGCGAAGAACCAGCTGACGTGTGACAACAGCGAGCGCTTCACACGCGCAGAGACAGACTTCTCCAACCTGTTCGCTCGAGATCTACTGCCTGCAAAGAATGGAGAGGAACAAACAATCCAGTTTCTTCTTGAGGTGGTGGAGATCCTCACCAATTATGTTCGCAAGACCTTCGACAGATCTACCAAAGTGCTGGACTTCCATCACCCTCACCAGCTTCTGGAGGGGATGGAGGGCTTCAACCTGGAACTGTCAGATCAACCAGAGTCCCTGGAGCAGATCCTGGTGGACTGCAGAGACACGCTCAAGTATGGAGTGAGAACAGGTCATCCTAGATTTTTTAATCAGCTTTCATCCGGACTGGACATCATTGGTCTCGCTGGAGAATGGCTCACCTCTACTGCCAACACTAACATGTTCACCTACGAGATTGCGCCCGTGTTTGTTCTGATGGAGCAGCTGACCCTAAAGAAGATGAGAGAGATCATTGGCTGGCCTAACGGTGATGGCGATGGACTCTTCTCACCAGGTGGTGCCATATCAAACATGTACAGTGTGATGGTTGCGCGGTATAAGTATTTCCCAGAAGTCAAAACCAAAGGCATGTCTGCAGCACCACGACTCGTGCTTTTCACATCTGAACATAGTCATTATTCAATCAAAAAGGCAGGAGCTGTACTGGGATTTGGCAAAGAAAATGTCATTCTCCTAAAGACAGATGAGAGGGGGCGTGTCATACCTGCTGACTTAGAGGCCAAGATCATTGATGCCAAACAGAAGGGTTATGTGCCACTGTTTGTGAATGCAACGGCTGGTACCACAGTATATGGAGCATTCGATCCCATCAATGACATTGCCGACATCTGCGAGAAGTACAACCTGTGGTTGCATGTGGATGGTGCATGGGGCGGAGGACTGTTGATGTCCAGGAAGCACCGTCACAAGCTAAGCGGCATTGAGAGGGCGAACTCTGTCACATGGAACCCTCATAAGATGATGGGTGTACCATTGCAATGTTCAGCCATCCTGGTTAGAGAGAAGGGCATTCTGCAGGGCTGCAACTCCATGTGTGCTGGATACCTCTTCCAACCAGACAAACAGTATGATGTGACCTATGACACCGGCGACAAGGCCATCCAGTGTGGCAGACATGTAGACATCTTCAAATTCTGGCTCATGTGGAAGGCCAAGGGCACAACTGGGTTTGAGCAGCACATTGACAGATGCCTGGAGCTTTCTGAATATCTCTACAATAAAATCAAGAACCGTGAGGGATATGAAATGGTCTTTGAGGGCCAGCCCCAGCACACAAATGTTTGCTTCTGGTATATTCCACCAAGCTTGCGTGGCATGCCACATGGAGACGAACGAAGGGAGAAGCTGCACAGGGTGGCGCCAAAGATCAAAGCAATGATGATGGAGTGCGGTACAACCATGGTAGGATACCAACCACAGGGAGACAAAGTCAACTTCTTCCGAATGGTCGTCTCCAATCATGCCGTCACCAAGTCAGACATCGACTTCCTCATAGACGAGATCGAGAGGCTGGGTAATGACCTGTAAAAGCAGAGAACTGCTGCTCTGTGTCTATAATAGTGGCTCAGGCATCTCCTTCATCCACTCGACAGGACAGTCGTGCGGTCTACACATTTAATGGCTATGTTTCGACGTCGTGTTGTGGTCCAATATGTTCTGTCCTTATTCTCAATGTATTTAGATCTTTAACTTACAGATTACATAGCCTATATAGTATGGAGGCTTGTTTCCGCCTCGGAATACAAAAATAAAAAAGGCAATTGTGACTTTTTATCTCGCAATTCTGACTTTTTTCTCAAATATAAAAATCTGGAATTGCGTGAAATAAAGTCCGAAGTGTAAGATATAAACTCACAATTGGTGAGAAAAACGTCATAATTGGATTGGAAACAATTACCTTTTGTAACTGCAAGTTTATATCATAATTCTTTTTCCGCAAAAGTTTTTCTGCAGAATTTTGAGATATAAATTAGGAAAAATGTCAGAATTGTGAGATATAAACTCGCAATTACAAATAAAACATTTAATTGGATGAAAAAAAGTCAGAATTGTATGATATAATCTTTATAAACCATTACAAATAAAACTTACAATTGCAAAAGAAAAAGTTAGAATTAAGATATAAACTCCAAATTACAAAGAAAAAACTTGTCATAAGGAGAAAAATGTCAGAATTGTAAGATATAAACTCGCAATTACAAATAAAACTCACAGTTGCGAGAAAAAAGTCAGAATTGTGAGATATAAACTCGCAATTACAAATAAAACTTGCAATTGTGAGAAAAACATCTGAATTTTGATATAAACTCGCAATTACAAATAAAACTCGCAGTTGCGAGAAAAAAAGTTGTTATTTTCAATCTGATCTCACAGCAATTCAAATGTATTTTACGAGGTGGCTAATTCGTACGAATTTGTAAATTTTTTGCTAAATCGCACATATTTTACAAGTTGTAAAATTCGTATGTATTCGTATGAATGACTTACCCCTAAACCTACCCATCACTGGGGTTTAGACAAATCGTATGAATTTGTACGAGTGACTTCGTACAAATTCGTACGAATTAGCCACCTCTTAAAATACGTACGAATTGGTCGCGAGATAGCGTTGGAATTGTGAGATATAAACTCGCAGTTACAAATAAAACTTACAATCGCGAGACAAAAAGGTCAGAATTGTGAGATTTAAACTTGCAATTACAAATTAAACTTGTCATAAGGAGAAAAAATGTCAGAATTGTAAGATATAAACACGCAATTGCGAGAAAAAACATAATTATGAGAAAAAAAGTTGCAATTACTTTTGTAATTGCGAGTTTATATCACAATTCTAAATTTTATTTCTCACAATTCTGATTTTATATCTCTCAATACTGACTTTTTTCACAGAATTTTGAAATATAAACTCAGAATTGGGGGAAAAAGGTCAGAATTGTAAGATATAAACTCGCAATTGTGAGAAAAAAAGTCAGAATTGTGAGATATAAAAATTTGGAATTGCAAAAAATAAAGTCTGAACTGTGAGATATAAACTCGCAATTACAAATAAAACTTGTAATTGAGAGAAAATGTGAGATGTAAACTCACAATTGCAACAAATAAAGTCAGAATTGCAAGACATGAACTCACAATTACCTTTTTCGCAATTACTAGTAGTTTTTTATTCCGTGGCAGAAACAAGCTTCCATAGTATAGCTACACGGTCACCTTACAGCACACTTTAAGTCCATTGGGATCATGTGTAACAGCTGGTGCTTCGGTTTGTAAATACAAGATAAAGACAAGCAAAGGCGCAGCACCCTTTTAATGAAGCTCGAAGCCCTTTCTGTGTAGTAGTGGGGTCTGTGTGTAAACCAGTGGTTGATCTGTATTTTAGTGTTGTGTTTCTAGAACTTACCTTGTAGCAGGTCATTTAAAGTGTTTAATCAACACCTTTGTGAGGTGAAACATAGGTATTCAATTTTCAGTTTGAAATATTCTACTGATATAAAAATATATAAACAAAGACCTTTATTTATATCGTGAGCCGAGCAGTGTTCAAAGGTTCAGTATTTCTCCCATTTGTAATGGTTCTTCATTTGTATTTTAAGACAAGATATATAATCAAATAAGTTTAGGCTAATGTTTAATGGTCCAGTAGTGTACTTGTGAGCCAAAGACAGAATTAGTGCCATACATTTTACAATATACTCGATATTCTTTGAAATAAGCAAGCATATAAATTATAACATGAATCTATATACATTTATATAAATATGAATATATTGTATATGTTTATTGTTGTTCAGGCCCTTAACTCTGTGCAATCAGTGTGTTAGTGTTATTGTGTGTATCTTTTGACTGAATGTTACAAGCAATCCTATCAATTATCTGAAGGTTAGTTACCAGATGTATAATGCTGATTATTGATATTCAACTCAGGCAATTATAGCATCATATATAAACAACAAAAGAAAACAATAAA

Function

symbol description
gad1b Predicted to enable glutamate decarboxylase activity and pyridoxal phosphate binding activity. Acts upstream of or within gamma-aminobutyric acid biosynthetic process and neurotransmitter biosynthetic process. Is expressed in nervous system and neural tube. Used to study epilepsy. Human ortholog(s) of this gene implicated in anxiety disorder; bipolar disorder; developmental and epileptic encephalopathy 89; schizophrenia; and spastic quadriplegia. Orthologous to human GAD1 (glutamate decarboxylase 1).
gad1a Predicted to enable carboxy-lyase activity and pyridoxal phosphate binding activity. Predicted to act upstream of or within carboxylic acid metabolic process. Is expressed in brain. Human ortholog(s) of this gene implicated in anxiety disorder; bipolar disorder; developmental and epileptic encephalopathy 89; schizophrenia; and spastic quadriplegia. Orthologous to human GAD1 (glutamate decarboxylase 1).
gad1 Enables glutamate decarboxylase activity. Predicted to be involved in chemical synaptic transmission; glutamate decarboxylation to succinate; and protein-pyridoxal-5-phosphate linkage. Predicted to act upstream of or within locomotory exploration behavior and social behavior. Predicted to be located in several cellular components, including axon; neuron projection terminus; and synapse. Implicated in anxiety disorder; bipolar disorder; developmental and epileptic encephalopathy 89; schizophrenia; and spastic quadriplegia.

GO:

id name namespace
GO:0009449 gamma-aminobutyric acid biosynthetic process biological_process

KEGG:

id description
K01580 E4.1.1.15, gadB, gadA, GAD; glutamate decarboxylase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000024_07308822_07327683.mRNA True 4182 mRNA 0.39 15 7306385 7327683

Neighbor

gene id symbol gene type direction distance location
CI01000024_07300290_07303945 NA coding downstream 871 7299343 ~ 7305514 (-)
CI01000024_07293038_07298458 GORASP2 coding downstream 7927 7292849 ~ 7298458 (-)
CI01000024_07239312_07251354 DC1I2, DYNC1I2, DYNC1I2B coding downstream 54520 7237542 ~ 7251865 (-)
CI01000024_07131727_07169937 SEMA5BB coding downstream 136448 7131013 ~ 7169937 (-)
CI01000024_07117698_07119483 NA coding downstream 186382 7117116 ~ 7120003 (-)
CI01000024_07340241_07341456 NA coding upstream 12091 7339774 ~ 7341516 (-)
CI01000024_07402113_07409179 SSB coding upstream 73477 7401160 ~ 7409795 (-)
CI01000024_07413462_07414187 PHOSPHO2 coding upstream 85403 7413086 ~ 7414187 (-)
CI01000024_07415578_07421136 PPIG coding upstream 87862 7415545 ~ 7421136 (-)
CI01000024_07424110_07430994 KLHL41B coding upstream 96244 7423927 ~ 7430994 (-)
G125386 NA non-coding downstream 19449 7284938 ~ 7286936 (-)
G125389 NA non-coding downstream 176381 7128822 ~ 7130004 (-)
G125385 NA non-coding downstream 191499 7113143 ~ 7114886 (-)
G125425 NA non-coding downstream 204465 7101685 ~ 7101920 (-)
G125379 NA non-coding downstream 263693 7042399 ~ 7042692 (-)
G125459 NA non-coding upstream 49351 7377034 ~ 7377263 (-)
G125476 NA non-coding upstream 109268 7436951 ~ 7437358 (-)
G125523 NA non-coding upstream 185195 7512878 ~ 7513128 (-)
G125716 NA non-coding upstream 185967 7513650 ~ 7513971 (-)
G125725 NA non-coding upstream 186621 7514304 ~ 7545425 (-)
CI01000024_03938368_03941795 NA other downstream 3364461 3938315 ~ 3941924 (-)
G123233 NA other downstream 4751349 2547460 ~ 2555036 (-)
CI01000024_00825386_00837898 NA other downstream 6479534 824968 ~ 838550 (-)
G125457 NA other upstream 29554 7357237 ~ 7358104 (-)
G125798 NA other upstream 647984 7975667 ~ 7976047 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00001003 gad1 coding CM030137.1 CM030137.1 12040325 ~ 12062111 (+)