G123026


Basic Information

Item Value
gene id G123026
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 1837752 ~ 1838161 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU139694
GTCTAAAATAATAATTTTTAAAGCGAAATGTCGGAGGATTTCGATATAAGAGAAGAGGAGTTTGAGTTTGTTGCACAGCCCTATTTGTTTAAACTGAGAGAGGCGTCTAAGCTTACGATACTCCTACATCCCGTCAGGGGTTACTCTTGTGGCGCAATATGCGCTCGTCTGACGGAAGCTAGTTATTTTATTTAATAAAGTTTTAAATATTTTTCTTATTTATATTTTTTTTATTTAAAAATTTTTTTTTTTTTACAAAAACCCATCGCTTCGCTTCAGAAGGCCTTTATTAACTCTCTGGAGTCGTATGGATTATTTTTATGATGGATGGATGCATTTTTTTGGGCTTCAAAATCTCGAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU139694 True 361 lncRNA 0.34 2 1837752 1838161

Neighbor

gene id symbol gene type direction distance location
CI01000024_01830050_01834086 NA coding downstream 3666 1828669 ~ 1834086 (-)
CI01000024_01813434_01822004 DYTN coding downstream 14473 1813406 ~ 1823279 (-)
CI01000024_01758848_01767950 NDUFS1 coding downstream 69802 1758574 ~ 1767950 (-)
CI01000024_01747187_01758168 INO80DB coding downstream 79584 1747041 ~ 1758168 (-)
CI01000024_01630975_01637097 GMPPA, GMPAA, GMPPAA, GMPPAB coding downstream 200605 1630948 ~ 1637147 (-)
CI01000024_01847790_01854114 CATIP coding upstream 9619 1847780 ~ 1854114 (-)
CI01000024_01854695_01861662 PNKD coding upstream 16204 1854365 ~ 1862458 (-)
CI01000024_01882305_01892725 MCM6 coding upstream 43750 1881911 ~ 1893916 (-)
CI01000024_01922262_01923329 CXCR4A coding upstream 83730 1921891 ~ 1923329 (-)
CI01000024_01955762_01966845 FAM117BA coding upstream 115643 1953804 ~ 1966845 (-)
G123025 NA non-coding downstream 20503 1817035 ~ 1817249 (-)
G123023 NA non-coding downstream 44620 1783192 ~ 1793132 (-)
G122864 NA non-coding downstream 48916 1658753 ~ 1788836 (-)
G122843 NA non-coding downstream 67502 1769061 ~ 1770250 (-)
G123003 NA non-coding downstream 161562 1669034 ~ 1676190 (-)
G123054 NA non-coding upstream 98837 1936998 ~ 1938773 (-)
G122868 NA non-coding upstream 131652 1969813 ~ 1987100 (-)
G123065 NA non-coding upstream 166721 2004882 ~ 2005230 (-)
G123067 NA non-coding upstream 169908 2008069 ~ 2008326 (-)
CI01000024_00825386_00837898 NA other downstream 1010901 824968 ~ 838550 (-)
G123233 NA other upstream 709299 2547460 ~ 2555036 (-)
CI01000024_03938368_03941795 NA other upstream 2097881 3938315 ~ 3941924 (-)
G125457 NA other upstream 5519076 7357237 ~ 7358104 (-)
G125798 NA other upstream 6137506 7975667 ~ 7976047 (-)

Expression


Co-expression Network