G122868


Basic Information

Item Value
gene id G122868
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 1969813 ~ 1987100 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU139527
GACGGCAACCATGGACACAGTTGCTAAAGCGAAAACGATGGCTTCCCCTCTGTACACTGATTGGACAGGCTGTGTGGTGGTCGGGGAAGGAGGTGGGAAGTTCTCTGTGAAGTTTAGGTTGCACATGTCTTTGTCGCAGCAGCAGAATCGAGAAGTTCCATTCAGGGCACCTGACGGTGTGTTGGTCACCACACAGTGGTCATAGCACTCCTGATGGTCACCAACATTTGTCCAGCAACCTTGCTTCACTAGTTGGATTTCATTATTTTTTTTCACCCAGAATCCAAAGCAGTGATTTCCGTGACTACAGCGAATGGTGGAGTTCTCATGAAAGACACGCCCCTCAACATGTCCACCAATCGGCTTGTCCAGAGACTGCAGCTGTTCTGCATACGCACACTCCCTCTGCTCGCCCTGTGCAGCAGCCACAGGACCCAGAAGAACCACCATTGCAATCAGTCCAACGTCAAGAATTGTTATTCGGCCTTGAACTGCCATGTTTTTCTTTTCTCCTCCTCTTCAAAGACAATATATTCGGATTTATTCTCTGTTACTTGTAGAGCTAGGCTTCAGGCTGCAGTCAGGCAATAATATTTGTGCTTTGGAGAGTCCAGCATCACACATTTTTTTTCAATACAGCATCAAAAGCATCATTTTAGAATGGCAAAAATAGTATAAAACTTAAAGGTCTTGCGTTAACCTTCACTGCTTTTTTTCCCTTCAGCAGGAAGCATCAAATGTAACCGGCTGATGACTGTGAAATCTGACTACTGAGTGTCTGTGTCTGTAGTAACAAACCAAATTAACAAATCACATCAAACTTTGTTTTCCCTTTGTTCCAAAGCACGCGCCGCATACATTTGCCTAATCGGAGTTTAGCGCAGTTATATGGGACATCCCGGGACCGCAAGTCTCCTCGATGGTAACACACAGTTTCTGGACAGGGAAACATCCGTTTCGTGGTTCCCGACTATTAAAATGTCCATTCGTCGTTATATCCCTCGCGTTCGTTATCTTTTGATCTTCGTTTCAGGATTTTTCCTCTGTTTCCATGATATATTGTGCTGGGAAACTATCCGTTTAGCGTTTTCGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU139527 True 1093 lncRNA 0.45 4 1969813 1987100

Neighbor

gene id symbol gene type direction distance location
CI01000024_01955762_01966845 FAM117BA coding downstream 2968 1953804 ~ 1966845 (-)
CI01000024_01922262_01923329 CXCR4A coding downstream 46484 1921891 ~ 1923329 (-)
CI01000024_01882305_01892725 MCM6 coding downstream 75897 1881911 ~ 1893916 (-)
CI01000024_01854695_01861662 PNKD coding downstream 107471 1854365 ~ 1862458 (-)
CI01000024_01847790_01854114 CATIP coding downstream 115699 1847780 ~ 1854114 (-)
CI01000024_02131229_02148749 STK24, STK24B coding upstream 144051 2131151 ~ 2148820 (-)
CI01000024_02170481_02175158 NR4A2, NR4A2A, NR4A2B coding upstream 182643 2169743 ~ 2175158 (-)
CI01000024_02249593_02250941 NA coding upstream 262493 2249593 ~ 2251094 (-)
CI01000024_02402657_02417463 WDSUB1 coding upstream 415313 2402413 ~ 2418061 (-)
CI01000024_02421600_02456292 BAZ2B coding upstream 434500 2421600 ~ 2456292 (-)
G123054 NA non-coding downstream 31040 1936998 ~ 1938773 (-)
G123026 NA non-coding downstream 131652 1837752 ~ 1838161 (-)
G123025 NA non-coding downstream 152564 1817035 ~ 1817249 (-)
G123023 NA non-coding downstream 176681 1783192 ~ 1793132 (-)
G123065 NA non-coding upstream 17782 2004882 ~ 2005230 (-)
G123067 NA non-coding upstream 20969 2008069 ~ 2008326 (-)
G123068 NA non-coding upstream 23310 2010410 ~ 2010704 (-)
G123069 NA non-coding upstream 23652 2010752 ~ 2010955 (-)
G123071 NA non-coding upstream 25156 2012256 ~ 2012460 (-)
CI01000024_00825386_00837898 NA other downstream 1142962 824968 ~ 838550 (-)
G123233 NA other upstream 560360 2547460 ~ 2555036 (-)
CI01000024_03938368_03941795 NA other upstream 1948942 3938315 ~ 3941924 (-)
G125457 NA other upstream 5370137 7357237 ~ 7358104 (-)
G125798 NA other upstream 5988567 7975667 ~ 7976047 (-)

Expression


Co-expression Network