G123165


Basic Information

Item Value
gene id G123165
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 2262793 ~ 2263711 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU139841
TACTTACCGCAAAACCGCCGAAATGCAAATTATTCGCGGACACCGATAAATCCATTTGTAAAAGAATCACAGGATGACATTCTTTCCAGAGGTGTTTTCACGCGATGAACGGGCGGCTCCGGCTGGGTCTCGCGCGCTTCCATGGGCAAGAGGGTCAGAGCGCGTGACGTAGACGCTCCACATAGAGAGATGCTGTTTCAGGGCATTTGAATGTGTTGCCATGTAGTCGAACAGGAGTTGATTCGGAAAAATGGAGTTCCCATCGAAGTACGTGAAAAAATACGGTTAGAGAGCGAAAACAACAATCACTAAATGATCACATGAGTGACCATCTGCTCGTAGTGCGCATTAACGCCCACAAATTCGTTACTTTGAATTGCTTGATATATGTGTTTAGTCGTCTATTGGTCGGATTTATAAGTATTCGGGTTAAACAAAGTCCACATAACTTTGGCGAAGACTAGCCA
>TU139843
GCAATGCATTGCCCAGGTTAGGAGGTGATGAACATATGGTCTAAATGCGCCATGCAGGGTCAGATGATGGACCAGAGATGATGATGGGAGGTGTAGGTATGTCGATTAGAGGTGGACGCGACACTACACCTGATCAAGTTATTCAGCTGTATGCATTGAACAAGGCCATCAGTCCATTTATGTAAGCATAACTACAGTGCAAATGCATATTTTCTGCACATTTAATCACTGCAATGAAGAAAGACAAATGGAATGAGCTTTAAAGCACGCATCGACAGAAAAGCAAACAGTTTCTCGGCTTGTTCACTAACCACAGCGTCTATTACAGCTCAGTTTTGAAAATGACTTAAGGAGAGATGCACGAGATCTACCGATAAAGCAGCGATGAATTCCCGCCGCCAGCGCGCGCCAGATGTTAGCAACGCTCCATTGGACCTGCGCGAAATCACCAGTACTTACCGCAAAACCGCCGAAATGCAAATTATTCGCGGACACCGATAAATCCATTTGTAAAAGAATCACAGGATGACATTCTTTCCAGAGGTGTTTTCACGCGATGAACGGGCGGCTCCGGCTGGGTCTCGCGCGCTTCCATGGGCAAGAGGGTCAGAGCGCGTGACGTAGACGCTCCACATAGAGAGATGCTGTTTCAGGGCATTTGAATGTGTTGCCATGTAGTCGAACAGGAGTTGATTCGGAAAAATGGAGTTCCCATCGAAGTACGTGAAAAAATACGGTTAGAGAGCGAAAACAACAATCACTAAATGATCACATGAGTGACCATCTGCTCGTAGTGCGCATTAACGCCCACAAATTCGTTACTTTGAATTGCTTGATATATGTGTTTAGTCGTCTATTGGTCGGATTTATAAGTATTCGGGTTAAACAAAGTCCACATAACTTTGGCGAAGACTAGCCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU139841 False 467 lncRNA 0.45 1 2262793 2263259
TU139843 True 919 lncRNA 0.45 1 2262793 2263711

Neighbor

gene id symbol gene type direction distance location
CI01000024_02249593_02250941 NA coding downstream 11699 2249593 ~ 2251094 (-)
CI01000024_02170481_02175158 NR4A2, NR4A2A, NR4A2B coding downstream 87635 2169743 ~ 2175158 (-)
CI01000024_02131229_02148749 STK24, STK24B coding downstream 113973 2131151 ~ 2148820 (-)
CI01000024_01955762_01966845 FAM117BA coding downstream 295948 1953804 ~ 1966845 (-)
CI01000024_01922262_01923329 CXCR4A coding downstream 339464 1921891 ~ 1923329 (-)
CI01000024_02402657_02417463 WDSUB1 coding upstream 138702 2402413 ~ 2418061 (-)
CI01000024_02421600_02456292 BAZ2B coding upstream 157889 2421600 ~ 2456292 (-)
CI01000024_02484606_02498687 NA coding upstream 220498 2475874 ~ 2503657 (-)
CI01000024_02555602_02562403 ZSWIM2 coding upstream 291572 2555283 ~ 2562932 (-)
CI01000024_02597194_02605289 NA coding upstream 333040 2596751 ~ 2605289 (-)
G123163 NA non-coding downstream 788 2261803 ~ 2262005 (-)
G123159 NA non-coding downstream 41720 2220768 ~ 2221073 (-)
G123158 NA non-coding downstream 42129 2220370 ~ 2220664 (-)
G123157 NA non-coding downstream 42438 2220065 ~ 2220355 (-)
G123152 NA non-coding downstream 50374 2211954 ~ 2212419 (-)
G123169 NA non-coding upstream 2578 2266289 ~ 2266975 (-)
G123223 NA non-coding upstream 259977 2523688 ~ 2523961 (-)
G123230 NA non-coding upstream 264577 2528288 ~ 2529219 (-)
G123232 NA non-coding upstream 266340 2530051 ~ 2530306 (-)
CI01000024_00825386_00837898 NA other downstream 1435942 824968 ~ 838550 (-)
G123233 NA other upstream 283749 2547460 ~ 2555036 (-)
CI01000024_03938368_03941795 NA other upstream 1672331 3938315 ~ 3941924 (-)
G125457 NA other upstream 5093526 7357237 ~ 7358104 (-)
G125798 NA other upstream 5711956 7975667 ~ 7976047 (-)

Expression


Co-expression Network