G123364


Basic Information

Item Value
gene id G123364
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 3042806 ~ 3044560 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU140073
AAAAATAACAAATGGACCATTTTGGCCGTTTTATTTGACAGATCAAATCCAATCGTTACAATTAGTTACCAATAAGCATGCCACTTGTTCAGTCAACTCATTGCAATCCAAATACTTACAGGGATCAGTATATTTTAATAATTTAATGTACAACAGCACCTGTGAAACCAGGGGACACAGATTTAATTTCCTCAGTGGAAACACTAGGGACCTGCAGTAACTTGACTCACTATTGCGTGGACAAACATAAAAATGGACATCTTCACTGCTAAAATGGACTGGCTTTAGAAGCATGCCCTGTTATGATCAATAATCCTGGGTACCTGATCTGTCACACCGTCTGAATAGATACTGTTAAAGACATCCGAATCCAAACAACAAACATTTAATTTAAATATTGCCACCTCCTCGTTCTCTATCTGTATTATGATGTGGCTGACTTTAAGTATGCAATAAGGTCTGCTCTCTCGCCCTTCTTCTTGATCCCAGCAAAGATCATCTTCGTGCCCGGAATGTACTTCTTGGGGTTCTCCAAATATTCCATCAAGGTATCTTCACTCCAGACAATGCCTTTGCTCTTGTTGGCATCTGTATAGGAAAACCCTTCTGCCTGACCAGTCTTGCGACCAAAAAGACCCCAAAGATTTGGCCCGACTTTGTGCTTGCCTCCGTTTTCAACTGTGTGGCACTGGGCGCACTTCTGGACGAAAACCTTCTTTCCCTTTTCAACGTCACCCATATTTACCTTTTAGACCGTGTGAGGAAGCTCCTTGCTTTGCAGGATACGATAATCTGCTCGTGCCGGTCGGGGGACCGATTCTCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU140073 True 823 lncRNA 0.43 3 3042806 3044560

Neighbor

gene id symbol gene type direction distance location
CI01000024_02939122_02964449 ABCC6A coding downstream 78357 2938383 ~ 2964449 (-)
CI01000024_02849288_02866286 NA coding downstream 176402 2849100 ~ 2866404 (-)
CI01000024_02829108_02838763 ATG9A coding downstream 203610 2828646 ~ 2839196 (-)
CI01000024_02771915_02777060 NA coding downstream 265746 2771806 ~ 2777060 (-)
CI01000024_02761265_02771248 NA coding downstream 271558 2760852 ~ 2771248 (-)
CI01000024_03048421_03049271 NA coding upstream 3604 3048164 ~ 3049529 (-)
CI01000024_03060967_03068650 MTX2 coding upstream 16252 3060812 ~ 3069706 (-)
CI01000024_03208565_03262749 KCNH7 coding upstream 164005 3208565 ~ 3262749 (-)
CI01000024_03284853_03286057 NA coding upstream 239650 3284210 ~ 3286057 (-)
CI01000024_03311028_03319956 NA coding upstream 266437 3310997 ~ 3319956 (-)
G123467 NA non-coding downstream 3154 3039433 ~ 3039652 (-)
G123426 NA non-coding downstream 3580 3038975 ~ 3039226 (-)
G123465 NA non-coding downstream 13922 3028599 ~ 3028884 (-)
G123463 NA non-coding downstream 14238 3026701 ~ 3028568 (-)
G123459 NA non-coding downstream 24071 3010028 ~ 3018735 (-)
G123385 NA non-coding upstream 9799 3054359 ~ 3055226 (-)
G123485 NA non-coding upstream 43635 3088195 ~ 3088399 (-)
G123486 NA non-coding upstream 43916 3088476 ~ 3088691 (-)
G123512 NA non-coding upstream 86820 3131380 ~ 3132504 (-)
G123233 NA other downstream 487770 2547460 ~ 2555036 (-)
CI01000024_00825386_00837898 NA other downstream 2215955 824968 ~ 838550 (-)
CI01000024_03938368_03941795 NA other upstream 891482 3938315 ~ 3941924 (-)
G125457 NA other upstream 4312677 7357237 ~ 7358104 (-)
G125798 NA other upstream 4931107 7975667 ~ 7976047 (-)

Expression


Co-expression Network