Gene
RNA
| Item | Value |
|---|---|
| gene id | G123486 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000024 |
| NCBI id | null |
| chromosome length | 8644187 |
| location | 3088476 ~ 3088691 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU140219 | True | 216 | lncRNA | 0.35 | 1 | 3088476 | 3088691 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000024_03060967_03068650 | MTX2 | coding | downstream | 18770 | 3060812 ~ 3069706 (-) |
| CI01000024_03048421_03049271 | NA | coding | downstream | 38947 | 3048164 ~ 3049529 (-) |
| CI01000024_02939122_02964449 | ABCC6A | coding | downstream | 124027 | 2938383 ~ 2964449 (-) |
| CI01000024_02849288_02866286 | NA | coding | downstream | 222072 | 2849100 ~ 2866404 (-) |
| CI01000024_02829108_02838763 | ATG9A | coding | downstream | 249280 | 2828646 ~ 2839196 (-) |
| CI01000024_03208565_03262749 | KCNH7 | coding | upstream | 119874 | 3208565 ~ 3262749 (-) |
| CI01000024_03284853_03286057 | NA | coding | upstream | 195519 | 3284210 ~ 3286057 (-) |
| CI01000024_03311028_03319956 | NA | coding | upstream | 222306 | 3310997 ~ 3319956 (-) |
| CI01000024_03449111_03472001 | ATP7B | coding | upstream | 360114 | 3448805 ~ 3472001 (-) |
| CI01000024_03473803_03480757 | HTR2AB | coding | upstream | 384899 | 3473590 ~ 3480757 (-) |
| G123485 | NA | non-coding | downstream | 77 | 3088195 ~ 3088399 (-) |
| G123385 | NA | non-coding | downstream | 33250 | 3054359 ~ 3055226 (-) |
| G123364 | NA | non-coding | downstream | 43916 | 3042806 ~ 3044560 (-) |
| G123467 | NA | non-coding | downstream | 48824 | 3039433 ~ 3039652 (-) |
| G123512 | NA | non-coding | upstream | 42689 | 3131380 ~ 3132504 (-) |
| G123401 | NA | non-coding | upstream | 52886 | 3141577 ~ 3141904 (-) |
| G123390 | NA | non-coding | upstream | 53385 | 3142076 ~ 3143061 (-) |
| G123408 | NA | non-coding | upstream | 55153 | 3143844 ~ 3144683 (-) |
| G123369 | NA | non-coding | upstream | 61867 | 3150558 ~ 3154638 (-) |
| G123233 | NA | other | downstream | 533440 | 2547460 ~ 2555036 (-) |
| CI01000024_00825386_00837898 | NA | other | downstream | 2261625 | 824968 ~ 838550 (-) |
| CI01000024_03938368_03941795 | NA | other | upstream | 847351 | 3938315 ~ 3941924 (-) |
| G125457 | NA | other | upstream | 4268546 | 7357237 ~ 7358104 (-) |
| G125798 | NA | other | upstream | 4886976 | 7975667 ~ 7976047 (-) |
