G123577


Basic Information

Item Value
gene id G123577
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 3753019 ~ 3754215 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU140321
GGGAGGGCTGATGTCCATGACTGATAGAGTGGGGTTCGAGCTGGGCTCTATATCACTGCCGCGGCGTCTGCGCCCTGGTTCCTCTAGCTCAGGAGTAAAGATGCTGCTTCCACTGCTAGTGCTGGGGCTCTGCTGCTCTGTAGGACTGAAGCTCACTGGAGAACGAAAACCATGAGCCTGTGTCCGCCGCGCCCTTGGAAAGGTCTTCCGTCCATCGCTGTAGTCCTGCAGACCAAACGAGATGTGATATCGCCTAGGATAGGTTCCTCCCTTCCCCGATTTTTCAAACACTGGTATATCGTACTCAGGGAATTCTTGATGGTTATCTGGGTAGCTCAGGGCTCGAGGCATACGGGATTTGGGATAGGTATCACACAAACTTTTGAACGATAGGGCATGTCTGTGAGATCAAAAGTTTCTGTGATTGTCACTGGATGCCTGGTCATGTCATGTGGCATCCTGACACAGGTTAAAAGAATGCTGTTAATACAAGTTCAGATCTGCCAACAAAATCTGTGACATGCTGTCAATTTCTACAGAAAATACATTAAATGGATAGTTCACCCAAAAATGAAAATTCTGTCATCATTTACTCACTCTCATGTTGTTCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU140321 True 611 lncRNA 0.48 4 3753019 3754215

Neighbor

gene id symbol gene type direction distance location
CI01000024_03682769_03686417 SUMO1, SUMO1.L, SUMO-1 coding downstream 66602 3681848 ~ 3686417 (-)
CI01000024_03593801_03622283 ALS2, ALS2B coding downstream 130736 3593469 ~ 3622283 (-)
CI01000024_03583865_03588688 NA coding downstream 164234 3582159 ~ 3588785 (-)
CI01000024_03563702_03570505 TMEM237, TMEM237B coding downstream 182514 3563606 ~ 3570505 (-)
CI01000024_03550821_03556930 CYP20A1 coding downstream 196089 3550560 ~ 3556930 (-)
CI01000024_03792493_03872952 KALRNB, KALRN coding upstream 38248 3792463 ~ 3872952 (-)
CI01000024_03919201_03934276 TBX19 coding upstream 164972 3919187 ~ 3934505 (-)
CI01000024_03938368_03941795 NA coding upstream 184100 3938315 ~ 3941924 (-)
CI01000024_03945597_03947286 NA coding upstream 191320 3945535 ~ 3947286 (-)
CI01000024_03950623_03954365 NA coding upstream 195695 3949910 ~ 3954392 (-)
G123648 NA non-coding downstream 23957 3728767 ~ 3729062 (-)
G123641 NA non-coding downstream 72057 3680695 ~ 3680962 (-)
G123639 NA non-coding downstream 79676 3673139 ~ 3673343 (-)
G123560 NA non-coding downstream 230442 3438967 ~ 3522577 (-)
G123593 NA non-coding downstream 316220 3436051 ~ 3436799 (-)
G123668 NA non-coding upstream 9229 3763444 ~ 3764097 (-)
G123697 NA non-coding upstream 137197 3891412 ~ 3891642 (-)
G123698 NA non-coding upstream 137948 3892163 ~ 3892369 (-)
G123723 NA non-coding upstream 180511 3934726 ~ 3934939 (-)
G123728 NA non-coding upstream 221733 3975948 ~ 3976198 (-)
G123233 NA other downstream 1197983 2547460 ~ 2555036 (-)
CI01000024_00825386_00837898 NA other downstream 2926168 824968 ~ 838550 (-)
G125457 NA other upstream 3603022 7357237 ~ 7358104 (-)
G125798 NA other upstream 4221452 7975667 ~ 7976047 (-)

Expression


Co-expression Network