CI01000024_03550821_03556930 (CYP20A1)


Basic Information

Item Value
gene id CI01000024_03550821_03556930
gene name CYP20A1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 3550560 ~ 3556930 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000024_03550821_03556930.mRNA
TCATCTAGACGAGCTTCTGGTGTACCTGGACTAAACCCCACAGAGGAGAAAGATGGGAATCTGCAAGACATAGTGAACAGAGGAAGCCTGCACGAGTTCCTGGTGGGCCTTCATGATGAGTTTGGGTCTGTGGCATCTTTCTGGTTCGGTGGGAGACCAGTGGTCAGCCTGGGCGCTGTGGACCAACTGAGACAACACATTAACCCCAACTGGACCACGGATTCCTTTGAGACAATGCTCAAGTCGTTGCTTGGTTACCAGTCAGGTTCAGGAGTGGGAGTGACTGAGTCGATGATACGAAAAAAAGTATATGAGGGAGCTATCAATAAAACCCTGGAAAACAACTTCCCTCTGTTGCTTCAGCTGGTGGAGGAGCTGGTTGATAAGTGGGCATCTTATCCTAAATCACAGCACACGCCACTTTGTGCTCATCTGCTTGGATTGGCTATGAAGGCTGTCACTCAGCTTGCCATGGGGAGTCGCTTTCAGGATGATGCTGAGGTCATTCGGTTTCGTAAGAACCATGAAGCGATCTGGTCAGAGATCGGTAAAGGTTATTTGGATGGATCCCTGGAGAAGAGTTCCAGCAGAAAGGCCCATTATGAGAGTGCTCTGGCTGAGATGGAGTCAGTGTTGAAGTCTGTGGCAAAGCAGAGAGCTGGGCAAGGATCTAGTCAATCATCTTTCGTTAACTATTTACTACAGGCCAATCTGACTGAGCGGCAGGTGATGGAAGATGGTATGGTTTTTACTCTAGCTGGCTGTGTCATCACTGCTAACTTGTGCATCTGGGCAGTTCACTTCCTATCAGTCTCAGAAGCAGTGCAAGATCGGCTCTATCATGAACTTGTTGAAGTGCTCGGAGAGGAGCCTGTTTCCTTAGAGAAGATTCCACAGCTGAGATACTGCCAGCAGGTGCTGAATGAAACCGTCCGCACAGCCAAACTGACACCCGTGGCTGCCAGATTACAGGAGGTGGAGGGGAAGGTGGACCAACACGTCATTCCCAAAGAATTTGACTTCCTTTACAGGTTTAATCCTGACAGATTTGCAGATGAGTCAGTAATGAAGAGCTTCTCGCTGCTTGGGTTTTCAGGGAATCAGGCCTGCCCTGAACTAAGATTTGCATATACTGTGGCCGCAGTGCTGCTCAGCACTCTGGTGCGCAGGTTGAGACTGCACAGGGTGGAGGGGCAGGTGGTTGAGGCCAGGTATGAGCTGGTGACCACACCCAAAGATGACACCTGGATCACAGTCAGCAAGAGGAACTGAAGGACTCGTATCTCACATTCCTGACAGCCTCTTCTGGGAAATGTGAATTATACATGGACAATAGTGTGTGCTCCACATTGTCTGGGTCAGAAATTGATAAGATCAATGCAATGTCATTTAGAAACGGTCCAGGTTATTAAAACTATATTCCATTGTTTTTAGAGCTTCATTCCTTCAAAATGCCACAGACAACAACATTCCATAAACTATGAACAATGTTTAAATCCAATCTTTTAACTGAAATCTTTAAATTTTAATAAA

Function

symbol description
cyp20a1 Predicted to enable heme binding activity; iron ion binding activity; and oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in female organism; male organism; and notochord. Orthologous to human CYP20A1 (cytochrome P450 family 20 subfamily A member 1).

GO:

id name namespace
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function

KEGG:

id description
K07435 CYP20A; cytochrome P450 family 20 subfamily A

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000024_03550821_03556930.mRNA True 1533 mRNA 0.47 11 3550560 3556930

Neighbor

gene id symbol gene type direction distance location
CI01000024_03526772_03550303 ABI2, ABI2B coding downstream 257 3525204 ~ 3550303 (-)
CI01000024_03499415_03506746 SUCLA2, SUCLA2.S coding downstream 43814 3498507 ~ 3506746 (-)
CI01000024_03473803_03480757 HTR2AB coding downstream 69803 3473590 ~ 3480757 (-)
CI01000024_03449111_03472001 ATP7B coding downstream 78559 3448805 ~ 3472001 (-)
CI01000024_03311028_03319956 NA coding downstream 230604 3310997 ~ 3319956 (-)
CI01000024_03563702_03570505 TMEM237, TMEM237B coding upstream 6676 3563606 ~ 3570505 (-)
CI01000024_03583865_03588688 NA coding upstream 25229 3582159 ~ 3588785 (-)
CI01000024_03593801_03622283 ALS2, ALS2B coding upstream 36539 3593469 ~ 3622283 (-)
CI01000024_03682769_03686417 SUMO1, SUMO1.L, SUMO-1 coding upstream 124918 3681848 ~ 3686417 (-)
CI01000024_03792493_03872952 KALRNB, KALRN coding upstream 235533 3792463 ~ 3872952 (-)
G123560 NA non-coding downstream 27983 3438967 ~ 3522577 (-)
G123593 NA non-coding downstream 113761 3436051 ~ 3436799 (-)
G123584 NA non-coding downstream 127545 3422686 ~ 3423015 (-)
G123583 NA non-coding downstream 143268 3406066 ~ 3407292 (-)
G123557 NA non-coding downstream 172256 3378011 ~ 3378304 (-)
G123639 NA non-coding upstream 116209 3673139 ~ 3673343 (-)
G123641 NA non-coding upstream 123765 3680695 ~ 3680962 (-)
G123648 NA non-coding upstream 171837 3728767 ~ 3729062 (-)
G123577 NA non-coding upstream 196089 3753019 ~ 3754215 (-)
G123668 NA non-coding upstream 206514 3763444 ~ 3764097 (-)
G123233 NA other downstream 995524 2547460 ~ 2555036 (-)
CI01000024_00825386_00837898 NA other downstream 2723709 824968 ~ 838550 (-)
CI01000024_03938368_03941795 NA other upstream 379112 3938315 ~ 3941924 (-)
G125457 NA other upstream 3800307 7357237 ~ 7358104 (-)
G125798 NA other upstream 4418737 7975667 ~ 7976047 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_031865 cyp20a1 coding NC_007117.7 CM002890.2 9952678 ~ 9969458 (+)