CI01000024_03526772_03550303 (ABI2, ABI2B)


Basic Information

Item Value
gene id CI01000024_03526772_03550303
gene name ABI2, ABI2B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 3525204 ~ 3550303 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000024_03526772_03550303.mRNA
ATGGCGGAGCTGCAGATGCTGTTGGAAGAGGAGATTCCTGCTGGTCGAGGAGCTCTGCTGGACAGCTACGCCAACCTAGAGAGAGTCGCCGAGTACTGCGAGAGCAACTACATACAGTCTCCAGATAAGCACAGAGCTCTAGAAGAAACCAAAAGCTACACTACTCAGTCTTTGGCCAGTGTGGCCTATCTGATCAACACTCTTGCCAACAATGTGCTCCAGATGCTGGATATACAGGCGTCCCAGCTACGCCGCATGGAGTCGTCCATCAACCACATCTCACAGACGGTGGACATCCATAAAGAAAAGGTGGCCAGGCGAGAGATTGGCATTCTCACTACCAATAAGAACACTTCCCGCACGCACAAGATCATCGCACCAGCCAATCCCGAGAGGCCTGTACGCTACATCCGCAAACCCATTGACTACAGTCTGCTGGATGACGTAGGCCACGGCGTAAAGTGGTTACTAAGGTTTAAGGTCAACGCCCAGAATATGAAAGCAGGTACAACTCCACGCACAGCTGCCCCGACTCAGAAACCACCCAGCCCTCCTGGCCCAGGCAAAGGAACACTAGGAGTCCAACACGCAACACCGCACCACCCCTGCAGAGCCCGGCTAGAACTGCATCCGTTAATCAGAGGACCCGCACGTACAGTAGTGGCAGCAGTGGTGGCAGTCATCCCAGCAGTCGCAGTAGCAGCAGAGAGAACAGTGGGAGTGGAAGTGTGGGCGTGCCCATCGCCGTGCCAACACCTGCCCCGCCCACAGCCTTTCCCGCTGCCCCCCAACCTCCCTGTTAACACCAACACCAACCCTCCTGCTGCAACTAGCACTCCCGCTCAAGGCAACGGTCCTCACTTTTACAGTATGAACCGGCCAATGACGCGGCACGCCACGCCCTCTGTGGGAGGTTCCCTGCCCTATCGCCGGCCGTCATCAGTTACTGGACAGCCCAACAACATGCCTCAGAACACAAATCCAAACATGATCCAAAACCAGCTCAATGGAGGGCCACACTACAACCTAAACCAAGCCCCTATGGCCCCTCCACCCCCCTCTATTCTCCAGATTACCCCCCAGCTACCACTCATGGGCTTTGTGGCTCGGGTTCAGGAGACCATCTCAGACGCACCTCCTCCACCGCCCCCTGCAGAAGAAGTGGAGTTCGAGGAGGCAACCCCGCCCCCGCCTCCTCCAGAGGACTATGAGGATGAGGAGGGTGATGATGAGGAAGAGTCAGCAGTGGTGGAGTACAGTGACCCTTACGCTGAAGAAGACCCACCATGGGCCCCTCGCAGTTACCTGGAGAAAGTGGTGGCGATTTACGACTACACGCGTGACAAAGAAGACGAGCTCTCCTTCCAGGAGGGGGCGATCATTTACGTCATCAAGAAGAACGACGACGGCTGGTTCGAGGGTGTGATGAGCGGCACCACGGGCCTCTTCCCTGGGAACTACGTGGAGTCCATCATGCATTACGCTGACTGAGCCACCGGGTGGCGCCACTACTCCTCTGTCCATCATCTTCCTCATTCAGACACAGAAACACAAATGAATTCAGCTACACTACGTCATGCACAGGCTTGTTGCAAGCAAACAAACTTTGTTGGAGAGCTGCGGGGAAAACTAAGGCGTCATGACCGGTGGCGCAGATTTTAATGGGAAAAAAACTGTTGAAATGTGTAAGATAAATACGTTAGGAACATTTATTCATCTCTTAATTTCAATCTCTTAGAAACATGTATCAGAAAAGTGTTGGTTTGCTTGACTTGTGTTGATAGTGATCGCTTTGCTTTCGCTCCTATCCGTCTCTACTCTGGAGGAATGGGTCTGACTAGTAGATGGACAGTTATCCTTTCATGTCATCATAAAACTGGAAGGCGGCCATCTTGGACGTGCATGTTCCTTTTACATCACCTCTTAACTGTGTGCTGTCCACTGACCAGCAAATGAGAGAAAAGCTATTGCCAAGAATGACAGAACAGGGATTTTATGCATAACTGTTGTGCCAGGTCATATAGAGACGCATCGATACAGGTGGGCTTCTTTTCTTTAGTTTTTAATTGTGTTGGGAGTTGAATTTCTTTTTTTTTCTTTTTTTTTTTAAACTGTTACATTTTGAGTGCAGTTCAGTTTGAAGTCTTTAGGAGGAGGACATACCAAAGGATTTCAGTGGTGTTTGGGATCATGAACGGGACCGACTACAACCTTAAAATACTTCTTTTTCACCATTCCTTTACATTCATTTCTTTCCAACAAGATTTTATTGCTTGAAATATTTGCAAGTATGTGTATTCTTTCTATGTATGATAAAAAGGAAAAAAAAAAAAAACACTATAAAATTGTTCAGGAAGTTTGTGCCATAAAGATATGTTCGTAGATGGTCATATTTTTGGACGTGAGAGGTTGTGTCTTGAATCTCGGCACCGGATGTGGTGTTCTTCAGGAAGAAAACGTGTATTGTGATCTTTAACCTCCGATTCATCCCTCTGACCAACTGTGGACTTACAGATACAAGACTATTCTATATATGTATGTTATATATTGATTTATATTATAGAAATACTATTGTGTTGGTGTATGACTGGTGTAGAGACAAGAGAACCCCATTTATCTGCAATAACAAAGGCACAGTTAGAAAGTCCTCAGTCGACGAGCTAGAGATTTTTAAAGCACAAGAGATAAACGTGATCTTAGGGAGACCTTACAAAATGTGAAGAACTGACTTTTTTTTTTTTTTTTGAATGAAGAGATATTAAACAGAAACCAGCCCAAATTTTCAAACATCCTCATACCCACATGCAGATAATGTGGAACAAACTGTACTAATGCACAGAGACTTTTTCTATCAAGTACTTTGATGTCTATATGTAAGTGTGTGTGAGTGCGTATGTGAGCGTGAAACGGATCGATTTCACTGTTTATGGATCATTGGTGACTGACTTGCTTGTCTGTGTGCAAATCTTTATTTTCAATGAAAGGTCTGTGGCGAGGGTGCGTGAATTGAGTCTTGCATGTTGATCATTTCTGTGATTTTCCTGCTGATGGAGAATAAA

Function

symbol description
abi2b Predicted to enable SH3 domain binding activity. Predicted to act upstream of or within actin polymerization or depolymerization. Predicted to be located in cell junction; cytoskeleton; and filopodium. Predicted to be active in lamellipodium. Orthologous to human ABI2 (abl interactor 2).
abi2 Enables several functions, including SH3 domain binding activity; identical protein binding activity; and ubiquitin protein ligase binding activity. Contributes to small GTPase binding activity. Involved in Rac protein signal transduction; positive regulation of cellular component biogenesis; and zonula adherens assembly. Acts upstream of or within peptidyl-tyrosine phosphorylation. Located in several cellular components, including filopodium tip; lamellipodium; and nucleoplasm. Part of SCAR complex. Is active in adherens junction. Colocalizes with actin filament.

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K05751 ABI2; abl interactor 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000024_03526772_03550303.mRNA True 3059 mRNA 0.47 12 3525204 3550303

Neighbor

gene id symbol gene type direction distance location
CI01000024_03499415_03506746 SUCLA2, SUCLA2.S coding downstream 18458 3498507 ~ 3506746 (-)
CI01000024_03473803_03480757 HTR2AB coding downstream 44447 3473590 ~ 3480757 (-)
CI01000024_03449111_03472001 ATP7B coding downstream 53203 3448805 ~ 3472001 (-)
CI01000024_03311028_03319956 NA coding downstream 205248 3310997 ~ 3319956 (-)
CI01000024_03284853_03286057 NA coding downstream 239147 3284210 ~ 3286057 (-)
CI01000024_03550821_03556930 CYP20A1 coding upstream 257 3550560 ~ 3556930 (-)
CI01000024_03563702_03570505 TMEM237, TMEM237B coding upstream 13303 3563606 ~ 3570505 (-)
CI01000024_03583865_03588688 NA coding upstream 31856 3582159 ~ 3588785 (-)
CI01000024_03593801_03622283 ALS2, ALS2B coding upstream 43166 3593469 ~ 3622283 (-)
CI01000024_03682769_03686417 SUMO1, SUMO1.L, SUMO-1 coding upstream 131545 3681848 ~ 3686417 (-)
G123560 NA non-coding downstream 2627 3438967 ~ 3522577 (-)
G123593 NA non-coding downstream 88405 3436051 ~ 3436799 (-)
G123584 NA non-coding downstream 102189 3422686 ~ 3423015 (-)
G123583 NA non-coding downstream 117912 3406066 ~ 3407292 (-)
G123557 NA non-coding downstream 146900 3378011 ~ 3378304 (-)
G123639 NA non-coding upstream 122836 3673139 ~ 3673343 (-)
G123641 NA non-coding upstream 130392 3680695 ~ 3680962 (-)
G123648 NA non-coding upstream 178464 3728767 ~ 3729062 (-)
G123577 NA non-coding upstream 202716 3753019 ~ 3754215 (-)
G123668 NA non-coding upstream 213141 3763444 ~ 3764097 (-)
G123233 NA other downstream 970168 2547460 ~ 2555036 (-)
CI01000024_00825386_00837898 NA other downstream 2698353 824968 ~ 838550 (-)
CI01000024_03938368_03941795 NA other upstream 385739 3938315 ~ 3941924 (-)
G125457 NA other upstream 3806934 7357237 ~ 7358104 (-)
G125798 NA other upstream 4425364 7975667 ~ 7976047 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00001347 LOC103029249,LOC108423993 coding CM030137.1 CM030137.1 26231286 ~ 26268997 (+)