G125819


Basic Information

Item Value
gene id G125819
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 8015652 ~ 8015945 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU142861
GGCTTCGTTACGTCATAAGTGTTGCGAAACATTTAGAAATTTCAATGGTTCACCACTGAGGGTGATGATCTCTGTGAACTGGTGATGGGCAGAGCAAGGCTTCATGAAACACTGAAACAGTTGAAGCAAATGAGCCGAATTGTGTCAAGGCTTCGAAACAATCCGACACCCGTCTCCACGGTGACACTGGTCACTTGCACGTGTTGATCTGAAATAACCTTGACAATGATTCAGACAAGTGTTGACAAATTATAACGTACATGTGGTTTAGCCAAACAAGGAAGTGTGTGAGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU142861 True 294 lncRNA 0.44 1 8015652 8015945

Neighbor

gene id symbol gene type direction distance location
CI01000024_07858315_07901816 NA coding downstream 113714 7858157 ~ 7901938 (-)
CI01000024_07847824_07855700 NA coding downstream 159311 7847573 ~ 7856341 (-)
CI01000024_07697986_07832289 PTPRFB, PTPRF, PTPRFA coding downstream 183363 7697986 ~ 7832289 (-)
CI01000024_07672858_07695341 KDM4AB, KDM4A coding downstream 319827 7672593 ~ 7695825 (-)
CI01000024_07604312_07619531 ST3GAL3, ST3GAL3A, ST3GAL3B coding downstream 396121 7604312 ~ 7619531 (-)
CI01000024_08161023_08259943 SZT2 coding upstream 144345 8160290 ~ 8259943 (-)
CI01000024_08260814_08264845 SZT2 coding upstream 244869 8260814 ~ 8264845 (-)
CI01000024_08292984_08380058 PBX1.S, PBX1A, PBX1B, PBX1 coding upstream 277039 8292984 ~ 8380058 (-)
CI01000024_08450580_08455758 NA coding upstream 434617 8450562 ~ 8457764 (-)
CI01000024_08460577_08479254 NA coding upstream 444524 8460469 ~ 8479690 (-)
G125802 NA non-coding downstream 32485 7982914 ~ 7983167 (-)
G125801 NA non-coding downstream 34558 7980858 ~ 7981094 (-)
G125798 NA non-coding downstream 39605 7975667 ~ 7976047 (-)
G125825 NA non-coding upstream 11837 8027782 ~ 8027990 (-)
G125827 NA non-coding upstream 18364 8034309 ~ 8034634 (-)
G125835 NA non-coding upstream 27963 8043908 ~ 8044118 (-)
G125846 NA non-coding upstream 42937 8058882 ~ 8059124 (-)
G125848 NA non-coding upstream 44435 8060380 ~ 8060675 (-)
G125457 NA other downstream 657548 7357237 ~ 7358104 (-)
CI01000024_03938368_03941795 NA other downstream 4073728 3938315 ~ 3941924 (-)
G123233 NA other downstream 5460616 2547460 ~ 2555036 (-)
CI01000024_00825386_00837898 NA other downstream 7188801 824968 ~ 838550 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G218044 NA non-coding CI01000051 null 1800877 ~ 1801108 (+)
eurasian perch (Perca fluviatilis) G182567 NA non-coding NC_053129.1 CM020926.1 6128583 ~ 6128828 (-)