CI01000026_10136110_10149386 (BRD7)


Basic Information

Item Value
gene id CI01000026_10136110_10149386
gene name BRD7
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 10135996 ~ 10149466 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_10136110_10149386.mRNA
CTATATAAAAGTATAATTCTTCTCAAAAGATGCAGCTATTTATTAGTGATAACAATGACACAAAATAATATATTAAGGTTTTCTGTATTAATTAGGTTTTTAGCATAGGACCTTATGGGCACACTGGGAGTTAGATTGGATGTATCAGGTGTTCAAAGTAGTAAACTAATTTGTGTTTCTGGCATTGAAGAGTTCACTGAGCGTCCTCTGAAGCTGGTGTTAAAAGTGGCGGGGAATGAGGTCACCACAGGCAGCCCTAGCCTCGAGAGTGTTTATGATGACCAGGTGACCAAAAAAAGGAAGGGCCCAGACTCTGTGGATCCAGACTGGGATGAACAGAGCAGAACTCCTGCTCGCTCCGATGTTTCCCAGGACAAGCCCCTCACCCCCTCACTTGCAAAAATGGAAGAAAAAGAGCAGACGCCTCTACAGGAGGCCTTGAGTCAGCTCATCCGACAACTCCAGAGGAAGGACCCTAGTGCATTCTTCTCATTCCCTGTGACGGACCTGATCGCCCCAGGATACTCTCTCATTATAAAGAGACCCATGGACTTCAGCACTATGAAGGAGAAAGTGAAGAAGGAGCAATACCAGTCACTTGAGGAACTCAAGCTGGATTTCAGAGTGATGTGTGAGAACGCTATGATCTACAACAAACCAGAGACGATTTACTACAAAGCAGCAAAGAAACTCCTCCACTCTGGCATGAAGATCCTGAGCACAGAGAGACTGGACAGTTTAAAGCAGAGCATAGAGTTCATGGCTGGCCTGCAGACATCCAGCAGTCATTCAGCAGAGGATGGAGACGAGGATGGCGGGACGTCTGACCCTGCCAAAGAGAGCTCATCTGTCATGGACACAAGTGACAACTCACAATCACCCCGTGTAGGCAATAAAGATACTGCAAGGGACAGTAAGGATGATGCTCAGAAGAACCAAGCAGAGAAAGACCTGGAGGAGATCAAGAAGATTGTTGAGGAGTCTGGAGGGAAACTCTCAAACAGAAGTCTGCAGTGTGAGCTGGAGTTTGAGAGAAGGACGTCTGATGGCTCAACCACCCTGGGAATCCTGAACCCCGCTGACCTGAGCGCTGGAGATCCAGGATACTGCCCAGTCAAATTGGGCATGATGGGAGGTCGATTGCAGACTGGAATAAACACCCTTCAGGGTTTCAAAGAGGACAAGAGAAACATGGTCACTCCAGTTTCCTATATGAATTACGGCCCATTCAGCTCATATGCTCCTACATATGACTCCAGTTTTGCCAATATCAGCAAAGAGGACTCCGATCTTATTTACTCCTTCTATGGAGAGGACAGCAGTCAGCCAGAATCCGAAAGCATTACAGATTACCTTGCTAAATCCGAGGAGCACATGAGCAGGTTAGCAGATAATATCTTGGATGCTTTGACCAGGGGGGAGCACTCGAAACAACTGAAAGAGACAGAAACTGATAATCTGCCCACAGAGGAGCCTGCAGAGAAAGTAGACACAACAGATGATGCTGAGGTTGTTGCGTCAGATCCCAGCAGTGGTGATAGTGTGACGCCTCTCAGTTCTGTGGGTTTGAATCCTGACCTGCTTCCTGAGAGCTTCGACTCAGAAGAAGCAGAGCATTTCCAACAGAAGTTGGATGAGACGACCATGTTGCTGAGGGAGCTGCAGCAGGTTCAGAAAGAGAGACTGAGCGCCAAACAGCCGCCAAACATCATCTGCCTGCTGGTTCCTACAGCTAAAGAGCTACAGCTTGCGGAGAAAGTTACAGGTAACCTGGCCCATTTGACCAGTCAGGTGACCCCTGGTGACGTGTGCAGTCTTTACGGTATCAGAAAAGCCATGGGTATCTCACTACCCAACGATACCACACAGGATACGTTCACACACCTGACCACAGTGGGAGATATAATTGAAACCATGGAGGGAGTGTGTTGAGATTCTCCATCACTGCAGTCTCAGTCTGCTTATTCCAGATCATCCCGCAATGGTGCTGTTTCTGATTTACTTTTCATTAA

Function

symbol description
brd7 Predicted to enable lysine-acetylated histone binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in acute myeloid leukemia. Orthologous to human BRD7 (bromodomain containing 7).

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG:

id description
K11723 BRD7; bromodomain-containing protein 7

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_10136110_10149386.mRNA True 2012 mRNA 0.47 16 10135996 10149466

Neighbor

gene id symbol gene type direction distance location
CI01000026_10124232_10124468 NA coding upstream 10161 10123916 ~ 10125835 (+)
CI01000026_09915483_09917692 NA coding upstream 218077 9915445 ~ 9917919 (+)
CI01000026_09900193_09906874 SALL1A, SALL1 coding upstream 228759 9900193 ~ 9907237 (+)
CI01000026_09666763_09669325 NA coding upstream 466294 9666680 ~ 9669702 (+)
CI01000026_09602263_09635635 TOX3 coding upstream 499002 9601643 ~ 9636994 (+)
CI01000026_10200749_10202405 NA coding downstream 49127 10198593 ~ 10202514 (+)
CI01000026_10265012_10268157 NA coding downstream 115479 10264945 ~ 10268548 (+)
CI01000026_10315650_10317985 NA coding downstream 165613 10315079 ~ 10317990 (+)
CI01000026_10351923_10354175 CEBPG coding downstream 201937 10351403 ~ 10356695 (+)
CI01000026_10453245_10454111 NA coding downstream 303659 10453125 ~ 10454176 (+)
G133153 NA non-coding upstream 67123 10068576 ~ 10068873 (+)
G132977 NA non-coding upstream 105485 10030239 ~ 10030511 (+)
G132974 NA non-coding upstream 113719 10022076 ~ 10022277 (+)
G132949 NA non-coding upstream 147333 9988139 ~ 9988663 (+)
G132950 NA non-coding upstream 152076 9983027 ~ 9983920 (+)
G133281 NA non-coding downstream 120601 10270067 ~ 10270293 (+)
G133285 NA non-coding downstream 128099 10277565 ~ 10277783 (+)
G133286 NA non-coding downstream 130257 10279723 ~ 10279929 (+)
G133303 NA non-coding downstream 149710 10299176 ~ 10299384 (+)
G133310 NA non-coding downstream 156924 10306390 ~ 10306607 (+)
G132667 NA other upstream 566836 9568739 ~ 9569160 (+)
G131077 NA other upstream 1629209 8501408 ~ 8506787 (+)
CI01000026_08297901_08307596 CTRB1 other upstream 1836582 8297857 ~ 8307629 (+)
G130967 NA other upstream 1946923 8188374 ~ 8189073 (+)
G130552 NA other upstream 3039344 7095053 ~ 7096652 (+)
G133192 NA other downstream 10353 10159819 ~ 10161961 (+)
CI01000026_11075931_11078249 MDK, MDKA other downstream 921302 11075784 ~ 11079080 (+)
CI01000026_11241496_11246081 NA other downstream 1095467 11241496 ~ 11246204 (+)
G133542 NA other downstream 1326651 11476117 ~ 11477544 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_033906 brd7 coding NC_007118.7 CM002891.2 37742299 ~ 37755346 (+)