XLOC_033906 (brd7)


Basic Information

Item Value
gene id XLOC_033906
gene name brd7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 37742299 ~ 37755346 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00066335
GTAATCTTTACCGACACAAAACAAAGAGCAGACTGGTCAAGCGCTGACCTGACACAACCACCCGCTTCACTTAAAATAATGGGCAAAAAGCACAAGAAACACAAATCAGAGAAGCACACACACGACGAATTTACAGAGCGTCCTCTGAAGCTGGTGTTAAAAGTGGCTGGGAATGAGGTCACTACAGGCAGTCCCGGCCTCGAGACTGCATATGATGACCAGGTAGATTACGACAAACACAAAgataagaaaaagaagaagaaaaagaaggacGAAAAGGACAAAGCCAGTCCTCCAGTATCACCGGTCGACAAAAAGAAAAAGATGACCAAAAAAAGAAAGGGCCCAGACCCTGTGGATCCAGACTGGGATGAGCACAGCAGAACTCCCGCTCACTCTGATGTGTCCCAGGACAAGCCTCTGACCCCCTCACTAGCCAAAATGACAGAAAAAGAGCAGACTCCCCTACAAGAGGCTCTAAGTCAGCTCATCCGACAACTCCAGAGGAAGGACCCAAGTGCATTCTTCTCATTCCCTGTGACGGACCTGATCGCCCCAGGATACTCTATCATTATAAAGAAACCCATGGACTTCAGCACTATAAAAGAGAAAGTGAAGAAGGAGCAATATCAGTCACTGGAAGAGCTCAAGCTGGATTTCAGAGTTATGTGTGAAAACGCTATGATCTACAACAAACCAGAGACCATTTACTACAAAGCAGCAAAGAAACTCCTTCACTCCGGCATGAAGATTCTGAGCAAAGAGAGACTGGACAGTTTAAAGCAGAGCATAGAGTTCATGTCTGGCCTGCAAACGTCCACCGGTCATTCAGCAGAGACTGGAGAGAACGAGGCCAGGACATCAGGCCCTGCCAAAGTCAAATCCTCTGTCATGTACACAAGTGACAACTCTCAGTCTCCCCGTGTAGGCAACAAAGACACTTCAAGAGACAGTAAGGATGACGCTCAGAAGTGCCAAGCAGAGAAAGACCTGGAGGAGATTAAGAAGATTATTGAGGAGTCTGGAGGGAAACTCTCAAGCAGAAGCCTTCAGTGTGAGCTGGAGTTTGAGAGAAGGACATCTGATGGTTTAACCACCCTGGGCATCCTAAACCCTGTTGACCTGAGCGCTGGAGATCCAGGATACTGCCCAGTAAAATTGGGCATGATGGGAGGTCGGCTGCAGACTGGAATAAACACCCTTCAGGGTTTCAAAGAGGACAAGAGAAACATGGTCACTCCAGtTGCATATATGAATTATGGCCCCTTCACCTCATATGCTCCTACATATGACTCCAGTTTTGCCAATATCAGCAAAGAAGACTCCGATCTCATTTACTCCTTCTATGGGGAAGACAGCAGTCAGCCAGATTCTGAAAGcattgCAGATTACCTTGCTAAATCTGAGGAGCACATGAGCAGATTAGCAGATAATGTCTTGGATGCTTTGACGAGTGGAGAGCATTCGAAAAAACTGAAAGAGACAAAATGTGATAATCTGCCGACAGAAGAGCCTGCAGAGAAAGACGACGCAACAGATGATGCTGAGGTTGTTGCATCAGAACCCAGCAGTGCTGATAGTGTAACTCCACTCACATCTGTGGCTTCGATTCCTGACCTGCTTCCAGAGAGCTTCGACTCGGAAGAAGCAGAGCATTTCCAACAGAAGCTGGATGAGACGACACTGTTGCTGAGGGAGCTGCAGAAAGTTCAGAAAGAGAGACTGAGCGCTAAACAGCCACCAAACATCATCTGTCTGCTGGCTCCCACTGCCAAAGAGCTGCAGCTTGCGGAGAAAGTCACGGGTAACCTGGCTCAGCTGACCAGTCAGGTGACCCCAGCTGATGTGTGCAGTGTTTATGGAATCAGAAAGGCCATGGGGGTCTCGCTTCCCAATGCACAGGATCCATTCATACACCTGACCGCAGTGGGAGATCTGATTGAACCCATGGAGGGAGTATGTTGATCCTTCGTCTCTGCAGTATGTCTCTTTCTGCTTAGTCCGGATCCCCCCTTCCTCcaattttcatttgtattttgttCCATTTAAATAAACgtccttctttttaaaaaaatat

Function

symbol description
brd7 Predicted to enable lysine-acetylated histone binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in acute myeloid leukemia. Orthologous to human BRD7 (bromodomain containing 7).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0070577 lysine-acetylated histone binding molecular_function
GO:0030246 carbohydrate binding molecular_function

KEGG:

id description
ko05225 Hepatocellular carcinoma
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-040426-2687 Predicted to enable lysine-acetylated histone binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in acute myeloid leukemia. Orthologous to human BRD7 (bromodomain containing 7).

Ensembl:

ensembl_id ENSDARG00000008380

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00066335 True 2077 mRNA 0.47 17 37742299 37755346

Neighbor

gene id symbol gene type direction distance location
XLOC_033905 NA coding upstream 156389 37579670 ~ 37585910 (+)
XLOC_033904 sall1a coding upstream 350127 37359004 ~ 37392172 (+)
XLOC_033903 NA coding upstream 551980 37186880 ~ 37190319 (+)
XLOC_033901 AL929307.1 coding upstream 557051 37060405 ~ 37185248 (+)
XLOC_033902 NA coding upstream 655487 37086597 ~ 37086812 (+)
XLOC_033907 NA coding downstream 52880 37808226 ~ 37808467 (+)
XLOC_033908 BX663605.1 coding downstream 95765 37851111 ~ 37863503 (+)
XLOC_033909 NA coding downstream 164132 37919478 ~ 37922901 (+)
XLOC_033910 cebpg coding downstream 334304 38089650 ~ 38095324 (+)
XLOC_033911 NA coding downstream 345063 38100409 ~ 38109640 (+)
XLOC_033899 NA non-coding upstream 1042470 36698642 ~ 36699829 (+)
XLOC_033912 NA non-coding downstream 389017 38144363 ~ 38145800 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000026_10136110_10149386 BRD7 coding CI01000026 null 10135996 ~ 10149466 (+)