XLOC_008395 (mrm3a)


Basic Information

Item Value
gene id XLOC_008395
gene name mrm3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 16185118 ~ 16192208 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016806
AGTGACGCGGAAGATGACAACAAAGATGGCGGCGCTCATGTACAACGTGAGTCGAGGACTTGTGATGTTAGGAGAGCGTAGTTTATTTCAGAGAGAACGTTACCAGATCTTGGTTAATTCCAGGCGATTTCTCCGAGGCCTCCGGCGGAGAACCGTGGCTGTATTGTACCCGGATGGTGAACGAGAGacattaataaaatcaaaaagaGTAACTGATATAACGAGCCAGGGGTTCACACAGAAGGGCAAAGCCAGAAAGGACGTCACAGAGAGAGCTGCTTACAAAAATTGCAGCGGTTATGTGTCTGAACGCGCAGAAGAGTCTCCTCAGATTAATAAACTCAAACTTGCAGGGCTGCGCTTTGAAAAGGCCCCTGCCGGAGACAACAGACTCGCGAGGGTGTCCAGCGTGGCGCGCTCCAGAGCGTTTCGGGATAAGGAGGGTAAGGTGCTGCTGGAGGGCCGGCGTCTGATCTGTGACGCTCTCTCAGCTGGAGCGTCTCCTCAGATGATCTTCTTCAGTTTGCtggagcgactgcaggagcttccTCTAGACAAACTACAGCAAGCCAAGCTCATCAAGGTCAAATATGAAGACATCAAGATGTGGTCTGACCTGGTCACTCCTCAGGGTCTTATTGCTATTTTCTCAAAGCCTGATGCCTCCCGCCTGACATTTCCAAAGGACGCTCGTCTTCAGTCTGTCCCTTTGTTTCTGATATGTGACAATGTACGAGACGCTGGAAATCTGGGAACTACTCTACGCTGTGCAGCAGCAGCAGGCTGTGACCGTGTTCTTCTATCCAAAGgttGTGTGGATGCCTGGGAGCCCAAGGTTTTACGTTCGGCTATGGGAGCTCATTTCCGCCTTCCAGTTTTTCCAAATTTAGACTGGGACGACATTTCTAAGCACTTACCGAAGAATGTGATTGTCCATGTAGCAGATAACTATAGCACTTCAACAAAACAACTCGTTTCAGGTCAAACAGAGAACGCTTCTTCAGATGATTACAGTGAAAGCgactctgatgatgatgatgatgaaaaagaTGAAGATTCTCTGCCGCATGTGAAGCCTCAGGTATACCATGAATGTTGGGCTCAGAGGAGCACAGCCCTGGTCATTGGTGGAGAGACGCATGGACTGAGTGTGGAGGCTCTTCGTCTGGCTGAGGAAACGGATGGTAAGAGGCTTTTTGTGCCCATGGCTCCAGGAGTGGAGAGTCTGAACTCTGCCATGGCTGCTGGTATTTTGCTGTTTGAAGGCAGACGGCAGCTTCTGATGTTGTCGGACAAATTGCGGAGAAGAGCAAGAACTAAAATGTTGTAGTAGAGTGTTTTTCTTGTAATGAAAAAAGGGATTTCATCAA

Function

symbol description
mrm3a Predicted to enable RNA binding activity and methyltransferase activity. Predicted to act upstream of or within methylation and rRNA processing. Predicted to be located in mitochondrion. Orthologous to human MRM3 (mitochondrial rRNA methyltransferase 3).

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0006396 RNA processing biological_process
GO:0032259 methylation biological_process
GO:0005739 mitochondrion cellular_component
GO:0016740 transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0008173 RNA methyltransferase activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-184 Predicted to enable RNA binding activity and methyltransferase activity. Predicted to act upstream of or within methylation and rRNA processing. Predicted to be located in mitochondrion. Orthologous to human MRM3 (mitochondrial rRNA methyltransferase 3).

Ensembl:

ensembl_id ENSDARG00000016543

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016806 True 1370 mRNA 0.49 4 16185118 16192208

Neighbor

gene id symbol gene type direction distance location
XLOC_008394 BX511308.1 coding upstream 139614 16035869 ~ 16045504 (+)
XLOC_008393 NA coding upstream 166329 15987054 ~ 16018789 (+)
XLOC_008392 dusp14 coding upstream 307286 15856178 ~ 15877832 (+)
XLOC_008391 tada2a coding upstream 365520 15786160 ~ 15819598 (+)
XLOC_008390 NA coding upstream 402566 15778988 ~ 15782552 (+)
XLOC_008396 p2rx8 coding downstream 150865 16343073 ~ 16371103 (+)
XLOC_008397 flot2b coding downstream 194880 16387088 ~ 16407983 (+)
XLOC_008398 CR847990.1 coding downstream 326759 16518967 ~ 16519083 (+)
XLOC_008399 galnt17 coding downstream 329577 16521785 ~ 16546472 (+)
XLOC_008400 BX649487.2 coding downstream 637554 16829762 ~ 16829876 (+)
XLOC_008463 BX663520.1 misc downstream 5059983 21252191 ~ 21252282 (+)
XLOC_008388 NA non-coding upstream 519432 15629506 ~ 15665686 (+)
XLOC_008384 NA non-coding upstream 732602 15450803 ~ 15452516 (+)
XLOC_008403 BX571762.2 non-coding downstream 722523 16914731 ~ 16920987 (+)
XLOC_008411 dre-mir-21-2 non-coding downstream 1181581 17373789 ~ 17373915 (+)
XLOC_008412 CR848791.3 non-coding downstream 1184159 17376367 ~ 17378063 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000053_02533620_02536887 NA coding CI01000053 null 2533593 ~ 2537840 (-)