CI01000026_12582462_12589223 (GAREM, GAREM1)


Basic Information

Item Value
gene id CI01000026_12582462_12589223
gene name GAREM, GAREM1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 12582304 ~ 12589557 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_12582462_12589223.mRNA
GTGTAAATAGACAGTCGGCTGACATGGCATCACTTACAATCCGCGACTGCCTTTGAGTCAACAAAAGGACATCTAACGAAGCTTTCTCCATGAAAGAGCCGTTCTTCACTGCAGATGCATGCTGCGGTGGGTTAACGTGCTGATGTTAGTAAGCTAACATGGACCTTGGATCAATGCTGTACAACAGTTTGAAAGATGTAACGTGGAGTACGACGACACTACCTTTGGACAGACTTGTCAGTGCCTACAGACTACCACAGATTGTGAAGTTGGACAGCGGGGAATCGGTGGAAGGGCTGAGAGAAAATGACTACCTCTTGATTCATTCATGCCGGCAGTGGACCACAATTACCGCCCATAGCCTAGAGGAGGGCCATTATGTCATCGGACCGAAAATCGAGATCCCTGTCCATTATGAGGGCCAGTTTAAGCTGCTGGAGCAGGACAGGGACATTAAGGAGCCTGTGCAGTACTTCAACAGCGTGGAGGAAGTGGCCAAAGCATTCCCTGAGCGAGTTTATGTCATGGAGGAAATAACCTTCAATGTCAAGATGGCATCAGGAGAATCCAATGAGGACACGGAAGTCTACAACATCACACTGAGCACTGGGGATGAGCTGACACTAATGGGCCAGGCTGAGATCCTCTATGCCAAAACATCGCGAGAAAAATCACGTTTCAACACTATCTTAAAGCGCATCGGCAAGCTTAACTCCATCAGTAAGCTTGGCCGTGGAAAGATGCCCTGCCTTATCTGCATGAACCACCGCACCAATGAGAGCATCAGCCTGCCTTTCCAGTGCCGCGGTCGCTTCAGTACCTGCTCCCCACTGGAGCTGCAGATGCAGGAAGGTGAACACACTATTCGCACAATCGTGGAGAAGACCAGGTTACCTGTGAATGTCATGGTGCCCAGCAGCCCGCCACGTAATCCGCATGACCTCCATTTGATCCGCGAAGGCCATCGATACAAGCTAGTCAACATCCAGACTAAGACAGTGGTGGTGTGTTGTGTGTTACGTTCGAACAAAATACTGCCAGTGCACTTCCCCTTGCACGTGCCTACAGCACTGCCACGTTTACTGGTGCCTGAAGGGCTGCTTCAAGGAGAAGCCTGGCTGGAGACAGTGGTCCACCGCTGGTTTGCTTACTGCCAGGAGCAGTTCGACATTGACGACTACTCTAGGGCAGTCCGAGACGTGCGGGTGGACTGGATCGAGGATGGAAAGAGCCCGAAAAAAAGTAGCGCCGGTGGAACGGGAATCTGCAACAGCAGTGGAAGCGGGAGCAATGGCTGCCCCTCACATGTGCATTTGCCAAGCTCTCTAAGCTCAGCCCGAGATGAACTGACACAGTCATTTCATCGCCTGTCTGTCTGTGTCTACGGAAACAATCTCCATGGGAACAGCGAGGTGAATCTTCAGGGTTGCGTTAGCTTATGTGGAGATTATGGGCCAGTAGAACCACCGGATGCAGATTATCTGCTTCCTGAACTGCTGGAGAGTTCTTCAGGCTCCCTTAAACCAGATGTGCCATACGAGGAGCTTTGGATGGATCATGTTAAGAATCCTGGACCTGTGCTAGACCACACTGAGGGTGTCCGGGGAAACTCTACAGTCTCTGGCTGCACGACTGTACTGCCATTCTCCACAGCAGGTCCTACAAGTGCACTGTTTGGCACAGATGTCAATCTACCTCCACCTCCGGTGCCTCCAAAGTCTGAAGCTGTGAAGGAGGAGTGCCGATTGTTGAATGCTCCACCGATTCCACCAAGGAGCTCCAAGCAGGCAGGCTCAAGCAGTGCCACAGTGCCATACCCTCCTGCCAAGCCACGTCAGACAGATACCCGCTCCCCAAGCCCAACACTATCCTATTACTCGTCCGGCTTACACAACATAGGTGGAGAGGGCGAATCTCAGAGTGAATCAGATGATCAGAACCATGCATGTTACCCATGTAACTGGATCAGACCGGATGCCAATGAAGGCTCCAAGCCTCTCCCTTGCCTCAGTCCTTCGGTAGATGCCTCTTTCTCCCGCCTTTCCTGGCCTAACGATTTCTGCGTGGGTGACTCGTCTAAAGGTGAGGACTTCACGTCGTTTCACTGCCGGAGTTACTCCAGTTATCCTCGGAAGAGGACCCCTGGTACTCCTAAGGCTTGTCCCTCAGGCTTGTTAGACTGGCAAGCAAATTGTGATGGGAGTGCTGTGGCCTCCAAGGCCCAAAAGTTTTCCCAGTCTGCCCAGTTTTGCACCAAGTCCACCAGCTACACCATGGAAATGTCCAGAGACAAATCAACAGAGGAATGTAACACTAATCAAAGCCAGTCCTGCCCTATCTTGCCTCCAAGAACCCCTAAATGTAACGATACAAAGAAAGATGCAGAGTGTGCTATTACAGCCACGGCTGATGTGGACGTTCTGGAACTTGAGTCCAAAAGCTGCTTGCTTGAAAGAGAGCATCACGGCACTACAGATGTGTTCTCCATTTCCTGTCCTGTAGCTACAGGCTTGTCTTGGCAACCACCAAGTAATCTATCAGGTATCTCCATTGAGGAGGTTTCTAAGTCACTACGGTTTATTGGTTTGGCAGATGATGTTGTCTCTTTGTTTGTGCAAGAAAAAATTGATGGAAATTTGCTCCTGCAGCTAACAGAGGAGATTCTGTCAGAAGACTTTAAGCTTAGCAAACTTCAAGTGAAGAAACTCATGCAGTTTATTAATGGCTGGAGGCCCAAAATGTAAGGCTGAACAAGTAAGCCAGTCTAGAGCAAAACATGTAATGTGCTGCAGTGATGCAGCAGCAAATATGGGCCTTCAGTATTGCATTAGACAGTTTTGTATCTCAATGCTATGCAGTCTTGTAATGATTTTAATAGCCATTCTGTTTAATATATACATGTATATAAATCTATATATTGATTGCTTTGTGTATTAACCTGTACCCATCTCTGTAATCTCTCTGACCTTACGGTACCTGCACAACAGACTTTATTTGCTCTAACCCAAAGCCTTTGAAAAACCTGAAGGTATTCTGACCCAATCCAACTGTGGCCTAAGTTTCTTTTGTTGTTGATCA

Function

symbol description
garem Predicted to enable proline-rich region binding activity. Predicted to be involved in several processes, including cellular response to epidermal growth factor stimulus; epidermal growth factor receptor signaling pathway; and positive regulation of ERK1 and ERK2 cascade. Predicted to act upstream of or within positive regulation of cell division. Orthologous to human GAREM1 (GRB2 associated regulator of MAPK1 subtype 1).
garem1 Enables proline-rich region binding activity. Involved in several processes, including cellular response to epidermal growth factor stimulus; epidermal growth factor receptor signaling pathway; and positive regulation of ERK1 and ERK2 cascade.

GO:

id name namespace
GO:0008284 positive regulation of cell population proliferation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_12582462_12589223.mRNA True 3078 mRNA 0.49 6 12582304 12589557

Neighbor

gene id symbol gene type direction distance location
CI01000026_12562467_12570436 DPH2 coding upstream 11530 12562467 ~ 12570774 (+)
CI01000026_12558237_12560933 RGS9BP coding upstream 20686 12558237 ~ 12561618 (+)
CI01000026_12551009_12554565 NA coding upstream 27739 12551009 ~ 12554565 (+)
CI01000026_12486292_12534245 SCRIB coding upstream 47977 12485886 ~ 12534327 (+)
CI01000026_12425699_12438163 NA coding upstream 143683 12424079 ~ 12438621 (+)
CI01000026_12653232_12657339 CHPF2 coding downstream 63515 12653072 ~ 12657836 (+)
CI01000026_12706512_12707086 NA coding downstream 115736 12705293 ~ 12707152 (+)
CI01000026_12867260_12871481 NA coding downstream 277654 12867211 ~ 12871720 (+)
CI01000026_12929788_12932668 HRH3 coding downstream 340082 12929639 ~ 12933391 (+)
CI01000026_12966022_12977066 ORC6 coding downstream 376039 12965596 ~ 12977588 (+)
G134314 NA non-coding upstream 100834 12456629 ~ 12481470 (+)
G134329 NA non-coding upstream 125842 12451916 ~ 12456462 (+)
G134282 NA non-coding upstream 172568 12409380 ~ 12409736 (+)
G134271 NA non-coding upstream 186014 12395063 ~ 12396290 (+)
G134306 NA non-coding downstream 6239 12595796 ~ 12597699 (+)
G134348 NA non-coding downstream 15043 12604600 ~ 12605365 (+)
G134350 NA non-coding downstream 19709 12609266 ~ 12609676 (+)
G134356 NA non-coding downstream 27398 12616955 ~ 12617540 (+)
G134357 NA non-coding downstream 29884 12619441 ~ 12621548 (+)
G133542 NA other upstream 1105397 11476117 ~ 11477544 (+)
CI01000026_11241496_11246081 NA other upstream 1327231 11241496 ~ 11246204 (+)
CI01000026_11075931_11078249 MDK, MDKA other upstream 1503224 11075784 ~ 11079080 (+)
G133192 NA other upstream 2420343 10159819 ~ 10161961 (+)
G132667 NA other upstream 3013144 9568739 ~ 9569160 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_033973 garem coding NC_007118.7 CM002891.2 41340520 ~ 41350398 (+)