CI01000026_13019100_13028307 (GPT2)


Basic Information

Item Value
gene id CI01000026_13019100_13028307
gene name GPT2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 13018120 ~ 13029368 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_13019100_13028307.mRNA
CTATAAAAAAAAAAAAGCAACCTGACAAAAAAAATGCAGGGTAGGCACTGTAAAAATGCAAACAAACATAAACATCATCTAGTCTGTTAAAGAGATTGTACAGCCTTATTCCAGCAGATGGCAGCATTTCATTCAGATTACATTAATTGCAGTCACTTCTTCAGCATTTGACTGTGGTAAAACCCATATTGCTTTAGCTTCTGCTCTCACACTTTCAGTGTGATGAAATAGGTAGCGTACAGAAGACACAAACAAGAAGATAATTTCGAAATGATTGTGTTTAATGACACTGGTCGCAGTATTAGAAAGTCAGAGGTCGGTTTTATTCACTTTTTAAAAGGTTTTGCTACCAAACTATGGTCTACCAAAATGTCAATGATAATTGATAATTGAAAACAGAAATTTTAAAATGACCAGATATGTCACATGTCATCTGAAACGGCACCTTTTAAAGCAACGTTTGTTTCAGACTCCCTTGTGTGTGTGTGTGTGTGTGTGTTTTTTTACGTACTCCTGTGTTCTGATGAAATTTTGGTCTGCCGTGACAGTCAGGAAGTCTCCTCCCCGCATACACACTCACCGGCTGCGCAAAATCATACAGCGCTGGGTATTGTAGTTTTATTTTTGAGCACTAAATGGTGACAGCGGATCAAGCACAGCAGCGTGAGAACTACAACCCCCATTGCCAACAGAACATGAGCGCAATGAATGAGAGCGCATAAAGATTGGCGGGTGGATGATCATAGTAGGCGATGAAGGTGGTTCTCTGAGCGAGATACAGTCAAGTACTTGATAATGCGGATCGGCCTTGTACAGAAGAAACATTTTCTGAAGTGATTTCGTTTTTTATTTGTCAATTTTAACCTTTAATTGTCTTAACTGGCGGTTAGAACGACGGTTATAGTATCTTTTACATTTGCGTCCCTTCACGCGCATCCTTGTTTTGAGCTTTTAAAAGGTTCACCCCACTCTCTGCCGACATGTATCGCTTGCAGTTATTGGCAACTCGGTCATTAATCGCCGGAGCTCTCGATCAGTATACACCCTTAACACTGACATCTCTTACCGGGGTAAGACACAAATCTCAAGGTCCGCCCGTGGAGAAGTACGGTCAGATGCGCTTCAGCACCGCCGAGGCTAAAGTGGTTGCTGGGCGTCTGAACGGAAAGATTCGGGAGAAGACACTGACTATGGACACACTGAACCCGCAGGTGAAGGCTGTGGAGTACGCCGTGAGAGGACCCATCGTCATCAAAGCTGGAGAGATTGAGAGATGCTTGGAGGAGGGTGGTACGAAACCCTTCTCTGAGGTCATCAAAGCCAACATCGGTGATGCGCATGCCATGGGACAGCAACCAATCACCTTCCTCAGACAGGTGGTGGCTCTCTGCACATTCCCTGAGCTGATGGACAGCCCCAGTTTCCCAGAGGATGCAAAATGGAGAGCACGACATATCCTGCAGGGCTGCGGGGGATACAGTCTTGGGTCATATAGTGCAAGCCAGGGTGTAGAGTACATCCGCAAAGACATTGCCACATACATAGAGCAGAGAGATGAAGGAGTTCCTTCAAACTGGGAAAACATTTACCTCACTGCTGGAGCTAGTGATGGCATTATGACTATTCTGCGGTTGCTGGTGTCTGGGAAAGACTCTTCACGGACCGGTGTAATGATCCCCATCCCTCAGTATCCACTTTACTCCGCTGCAATCTCAGAGATGGATGCAGTACAGGTCAACTACTACTTGGATGAGGATAACTGCTGGGCCCTGGACATCAATGAGCTTTACAGATCCTATCAGGCTGCCAAACAGCATTGCCAGCCCCGAGTCATTTGCATCATTAACCCTGGCAATCCTACGGGTCAGGTCCAGAGTAAAAAATGCATTGAAGAAGTCTTGCACTTTGCTTATGAGGAGAATCTCTTTGTTATGTCAGATGAGGTGTATCAGGAAAATGTGTATGCTCCTGACTGTCAGTTCCACTCCTTCAAGAAGGTGCTATATGAGATGGGTCCTGAGTACTTCAACAATGTGGAGCTCGCCTCCTTCCATTCCATTTCCAAAGGCTACACGGGAGAGTGTGGCTTCAGGGGTGGATATATGGAGGTGATCAACATGGATCCTGAGGTCAAGGCCCAGCTGGTGAAGCTTTTATCAGTTCGACTGTGCCCCCCCCTGGCTGGCCAGGCTGCAATGGATGTCATCGTCAATCCTCCACAACCAGACGAGCCCTCGTTCAGACAGTTCTACCAGGAGAAATCGTCAGTGCTGGGTGCTTTAGCAGAAAAAGCTAAGCTAACTGAGCAGATCCTGAATTCAGTTCCAGGAATCAAGTGTAATCCCGTCCAGGGGGCCATGTACGCCTTCCCTCGCATCTTTATCCCTCCTAAGGCAATGGAGGAAGCCAAGGCAAGTGCTCATACTTCAGCAGAACTTGAGCTCTCTGGTGGAGCTCTAGGAATGCAGCCTGACATGCTGTACTGCCTGAGGTTGCTGGAGGAGATGGGGATCTGTGTTGTTCCTGGTAGTGGCTTTGGGCAGAAAGATGGAACTTATCATTTCAGAGAAAAGCTAAAGGAACTTCTTGGCAAAGTGCGAGATTTCCACATCAGTTTCCTGAAAGAGTATTCGACTGTGGAGTAGCTACAGACATGAGATGTGTCCTGATTAAGAAAACATAAGCTGGCGAGCTCCAGCACTACTTAACACACTAACTACACGTTTAAACTGTAAAGGTAGTGTTAAGTAATTTAATGAAGTTTTAAAAAATTCAGCCTTGTTTACCAATACAAAAATGGTTTCTGGATGAGTTTTGGGGAACTACTAGCAGTTTAGTCAGACATGTAACACTGTTTGAATGTTTTCACAGTCCATTAGAGGAAAATAGGATACAGCAACATTATCAATCATTTTTCCCTCTGTTAATTTGCTTTTAATTCATCAATTCTGCAGCAGGGTGTGTGGGTAATATACTGTCATGCATGAGATCGAGATCCAATTACAAATATTATTTATTAACAACTTTCCAAACCAGCAACTGAATTGTTCAGTTGAAATTCTTTTGTAGCGCCTTATTTGAACTACTCAAAACTATTTTGCCTGATGAAAATTGAGCCATTTTGCTTTGGTTTGGGGTGGATTGTGGGGTGGAGGGGTGGATTGTGATGTGACTTAACACTGAAGGTACATTATTCACATTATGGTTCTGGAAAGTTTACAAGGAGGGACTCGATGTTTTTGTTGTCCTCATCCTTAGTTGCACTCATTGCCATGCAATGTACATAAACTTTTTTTTTTTTTTTTTTTTTTAACAACATTACAAGCTTGGTCACAAGTTAAGCTTCTGTGGAAGATTGTGACCAAGGTGAAAACATGGACTGAAGGGAGCATGTGTGGAGAAAGTGCTGGCTTGTAATTGTTTACTGATGTATTTTATTTCCTCTTTTTGCATTGCAAATTATGTTAAACTATTAAACAAAATCCTTTACTATGATTTGATCATGAGTTCATGAATAACTACATAGCATGTGCGCATGAAATTGCGACATCAGTAGCGAACAGCCAATCACATGCTTTGAAACGGTGAGACTGCAGTTCACTTCTCATAAGAGAGTCAGTGTTATTCACTTCTCTCTTCTGCTGAATATTGAGATTATGAAATGTGAAGAATTTAAACAGTTTTCCTCAAAAGGGGAAAAACTAAA

Function

symbol description
gpt2 Predicted to enable catalytic activity and pyridoxal phosphate binding activity. Predicted to act upstream of or within biosynthetic process. Is expressed in several structures, including axial chorda mesoderm; axis; immature eye; musculature system; and nervous system. Orthologous to human GPT2 (glutamic--pyruvic transaminase 2).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG:

id description
K00814 GPT, ALT; alanine transaminase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_13019100_13028307.mRNA True 3706 mRNA 0.43 11 13018120 13029368

Neighbor

gene id symbol gene type direction distance location
CI01000026_12966022_12977066 ORC6 coding upstream 40532 12965596 ~ 12977588 (+)
CI01000026_12929788_12932668 HRH3 coding upstream 84729 12929639 ~ 12933391 (+)
CI01000026_12867260_12871481 NA coding upstream 146400 12867211 ~ 12871720 (+)
CI01000026_12706512_12707086 NA coding upstream 310968 12705293 ~ 12707152 (+)
CI01000026_12653232_12657339 CHPF2 coding upstream 360284 12653072 ~ 12657836 (+)
CI01000026_13218786_13290069 PHKB coding downstream 189418 13218786 ~ 13290154 (+)
CI01000026_13318769_13335447 NA coding downstream 288715 13318083 ~ 13336525 (+)
CI01000026_13356327_13411385 ADAMTS18 coding downstream 326959 13356327 ~ 13411734 (+)
CI01000026_13705684_13706187 NA coding downstream 675616 13704984 ~ 13706562 (+)
CI01000026_13837986_13903960 NA coding downstream 808371 13837739 ~ 13904262 (+)
G134762 NA non-coding upstream 11946 13005972 ~ 13006174 (+)
G134761 NA non-coding upstream 12451 13005442 ~ 13005669 (+)
G134759 NA non-coding upstream 13155 13004765 ~ 13004965 (+)
G134753 NA non-coding upstream 20666 12984847 ~ 12997454 (+)
G134702 NA non-coding upstream 73435 12850847 ~ 12944685 (+)
G134701 NA non-coding downstream 3427 13032795 ~ 13033881 (+)
G134772 NA non-coding downstream 27952 13057320 ~ 13116992 (+)
G134871 NA non-coding downstream 274964 13304332 ~ 13304723 (+)
G134880 NA non-coding downstream 295834 13325202 ~ 13325403 (+)
G134870 NA non-coding downstream 385833 13415201 ~ 13417287 (+)
G133542 NA other upstream 1541213 11476117 ~ 11477544 (+)
CI01000026_11241496_11246081 NA other upstream 1763047 11241496 ~ 11246204 (+)
CI01000026_11075931_11078249 MDK, MDKA other upstream 1939040 11075784 ~ 11079080 (+)
G133192 NA other upstream 2856159 10159819 ~ 10161961 (+)
G132667 NA other upstream 3448960 9568739 ~ 9569160 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_033980 gpt2 coding NC_007118.7 CM002891.2 41887429 ~ 41901688 (+)