XLOC_033980 (gpt2)


Basic Information

Item Value
gene id XLOC_033980
gene name gpt2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 41887429 ~ 41901688 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00066530
GACTAGTACAGAAGAAACATTGTCTGAAGTGATTTCgctttttatttgttagttttaacGTTTACTTTTTCTGACTGACGGTTAGACCGAGAGTTACCGTTATCAGTTCAAACGCGTATCCTTCTCTCGGGCTTTTGACAGCTTGATTCTTCAAACGGACTTGACTTCCTCACTGTGCCGAAATGTTTCGCTTGCAGTCGCTGGCAGCTCGGTCGTTGGTTGCCGGGGCTCTGGATCAGTGCACCCCGCTGATATCTCTTACCGGGGTGAGACACAAGTCTCAAGCTCCGACCGTCGAGAAGTACGGCCAGATGCGCTTCAGCACCGCCGAGGCTAAAGTGCCCGCCGGGGGTCTGCACGGTAAGATGCGAGAGAAGACCCTGACGATGGACACCCTGAACCCGCAGGTGAAGGCTGTGGAGTACGCCGTGAGAGGACCCATCGTTATCAAAGCTGGAGAGATTGAGAGATGCTTGGAGGAGGGTGGAACAAAACCCTTCTCTGAGGTCATCAAAGCCAATATTGGTGATGCTCATGCCATGGGACAGCAACCAATCACCTTCCTCAGACAGGTGGTTGCTCTCTGCACATTCCCTGAGCTAATGGAAAGCCCTAGTTTCCCAGAGGATGCAAAATGGAGAGCACGGCGTATCCTGCAGGGCTGCGGAGGTCACAGTCTGGGGTCATATAGTGCAAGTGCTGGTGTGGAGTACATTCGTAAAGACATCGCTGCATACATAGAGCAAAGAGATGAGGGAGTTCCTTCAAACTGGGAAGACATTTACCTCACCACTGGAGCTAGTGATGGCATAATGACTATTCTGCGGCTGCTGGTTTCTGGGAAAGACTCTTCTCGGACTGGTGTAATGATCCCCATTCCTCAGTACCCGCTTTACTCTGCCGCAATCTCAGAGATGGATGCTGTTCAGGTCAACTACTACTTGGATGAGGACAACTGCTGGGCCCTGGACATCAATGAACTTCACAGAGCCTATCAGGCTGCCAAACAGCACTGCCAGCCCCGAGTCATCTGCATCATTAACCCTGGCAATCCTACGGGTCAGGTTCAGAGTAAAAAATGCATTGAAGAAGTCTTGCACTTTGCTTATGAGGAGAACCTCTTTGTGATGTCAGATGAGGTGTATCAGGACAATGTGTATGCTCCAGATTGTCAGTTCCACTCCTTTAAGAAGGTGCTATACGAGATGGGTCCTGAGTACTACAACAGTGTGGAGCTCGCTTCTTTCCATTCCACTTCCAAAGGCTACACAGGAGAGTGTGGCTTCAGAGGAGGTTATATGGAGGTGATCAACATGGATCCTGAGGTCAAGGCGCAGCTGGTGAAGCTCTTATCCGTTCGACTGTGTCCACCCTTGTCTGGCCAGGCTGCAATGGATGTCATTGTCAACCCTCCTCAACCAGACGAGCACTCATACCAACAGTTCCACCAGGAGAAGTCATCGGTGCTGGGTGCTTTAGCAGAAAAAGCTAAGCTAACTGAGGAGATCCTGAATGCAGTTCCAGGAATTAAGTGTAATCCCGTCCAGGGGGCCATGTATGCCTTCCCTCGCATCTTTATCCCCCCTAAAGCTATGGAAGAGGCTAAGACTCTAGGAATGCAGCCTGACATGTTGTACTGTCTGAGGCTGTTGGAGGAGACGGGCATCTGTGTTGTTCCTGGTAGTGGTTTTGGCCAGAAAGATGGAACCTATCACTTCAGAATGACAATCCTGCCATCCAAGGAAAAGCTGAAGGTACTACTAGGCAAACTGCGAGACTTCCACGTCAGTTTCCTGAAGGAGTATTCTGCTCTGGAGTAGCTGCACACATGTAGAAAACCTGCTTAACACACTAATTGCTCATTTAAACTGTAAAGATAGCGTTGAGTATCatgcctttttttatttatttatttttttagataattgAAATTTTAAAGATAACTTAAGCCTAGAATTACAGCCTTGTTTACTAATATTTTGGGGGAATGCTTTCTAGGTGTGTTTTGGGGAAGAATTAGCAGTTTATTCATAATTGATgaatgtttactttttacttttattaagaaAGAAATGGGTCAtaggaacatttttatttatttatttcttctcaaaatgaaagggttagttcaccctcCCTGTCTTAAAAGTTTCTCATTTACTCTCATTCAATAGTTCAAGTATTTCCGTGAACATTTGAAAtggatttcttttttgttttgaagcAGCCATTAACGTCAGTAGTAATATTATGGAAGTAAATGGCTGTTTTTCACCATTATTCAGCttctcttattttgtgttcaacagaaaaaagtaaCTAAAACTCATTTGAAACAATTGGAGGATTCATGTAAAGGAGTTACGATGacacaattaaaacatttttttggtgaactatcccttaaatttTGCTAGTTTTACATCAGGGTGCATTAAAAACACTCTCTCGTACGTGATATTCAGTTACAAACATTATTAACAACTTTCCACACCAGGAACTGAACTGTAAAGCTTGACATCAGCAATGTTCCAGTTAAAAAAATCTTGTGTAGCACCTTATATAAACTCTGACGGGGATCTAGCCACTTCCTCTGCTGGTGAAGAGGAAGAGGTGGTGTGGTGTCGCTGAGGGTACATCTTTCATGTTATGGTTGTGGAAAGTTTACAAGGAGGGACTGTTTTAATGCTTGTTTTGTCCTCATCCTTAGTTGCGCTCATTGCCATGCAatgtacataaatattttatCTCACAAAATTGCAAGCTCAGCCACAAGTTAAGCTTCTGTGGAAGATTGTGACTGAGCTGATGATTTATGGCGTTTCAGAAACCTGTGTGTTTCCCAGGctggctaataactttgactaaAGAAAGTGCTGGCTTGTTTTTGTTTACTGATGTCTTTTCTTCCGTTTTTGAATTGCAAATCTTTTTGTTTATGAATtgcaaatctttttttgttttgtttactctaTTAAACCTAATTCTGTTTGAATCAGAGCAGGGGCCTGTGCCTTCAATCTAACTAAACTATATCtacagataaacaaacaaacaaaccaattcaGTCATGCTTTGTTGGAagcaatttacttttttttttcttttttgatttggAGTTCATTGGAGAACATGTTTTAGTTTTTCTATTTGCTGAAGATTGATTATGTATTTCTATTTCGTATACTTTTCTATTCAAATGAAACTGACTTGGATTAgttttgtgatttattaatttaaaagcatttagcaGCATTTCAGATGCTTTAAAACTCGCAAAATACAACTTAAGTTTTCCAAGTTGTTTTCGGCCCGGTTTCTCAAAGAGTTTTAAGCATCTTATATAGAAAATACCATAGAAAGGCATCTTCAGATGGAAAAAAGGCACTGCTGTATTTTATATTTCACTGCAAGTTTAAGGCAGCTCTGATGTGTGTAAACATTAACAGACTTCCCTCATTTCTTACACACTTTACATCAACACGTAAGCCTAGTGGAGAACCTTTGCAGTTTGAAAAATGATAGGTAAtgctattttatattatttaaaatatatacataattgcatttaattactgaaactattgtaaatgtttttataacaTGTTAATGGTCAAAACCTTTGCAATTACTTCTCAATAAGTTgattatgtgattttgttttgtttttagaatgaTTGCTCTGGTCCACATCAAATTAGTTTACTGTTAAGTCTATTTTGTAGGAAGAACTGACCGCATTTTGACATATGTTGGTTATTAAAGTTACAGTGGTGAACCCTGGAAAAACTTGATCTTTTCAtgtcataggtctcaaactcaattcctggagggccgcagctctgcacagttttgcttcaaccttaatcaaacacagctgatcccaATAATTGAGTCACGagcaccttgattagttggatcagctgtgtttgattagggttgaagaggaactgtgcagagctgcggccctccaggaattgagtttgaggccCATGCCTTACATTTAAGGGTtcacaaactcggtcctggagggccggtgtcctgcatattttagtttaacCTCAATAAGCACACcggaaccagctaattaagctctttccAGCTATACTAAGATCTGTGTgtttgaaggaagttggagctaaactatgctggacaccggccctccaggaccaagtttgggcacccctgccttaCATGATCTCTTGAAGCAGGATTGGCACAAACCAATATAAAACCTCACTGGTACAGGCCCCTAGCTCATTTCAGATAGTAAGTTTTATTTACGAATGAAATATCAGCCATTAAGAGATGTTAGTGCCAAAGTtgtaaatctctctctctctctctttctgacaCATCTCTCATGTATCATATCTAAGCCATTAACAGTGAATGAATATTGTTAATGCATCCATTGAACTTGATTATCACTTTATATGAGGTGCCTTTACTCAGGAGTATGAGATGAGCAAATGAGTTTTCCCTACATGCATTAGTTGCTTGTCATATAGATTGATTTCTTGTTTACAGAATTTTTGAAAACTTGCCCAATGTTAAGCTTGTATATAGTATTTTCAACTGAATATTAAAGATATGCAAGTCATTCaaattt

Function

symbol description
gpt2 Predicted to enable catalytic activity and pyridoxal phosphate binding activity. Predicted to act upstream of or within biosynthetic process. Is expressed in several structures, including axial chorda mesoderm; axis; immature eye; musculature system; and nervous system. Orthologous to human GPT2 (glutamic--pyruvic transaminase 2).

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0005575 cellular_component cellular_component
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030729-8 Predicted to enable catalytic activity and pyridoxal phosphate binding activity. Predicted to act upstream of or within biosynthetic process. Is expressed in several structures, including axial chorda mesoderm; axis; immature eye; musculature system; and nervous system. Orthologous to human GPT2 (glutamic--pyruvic transaminase 2).

Ensembl:

ensembl_id ENSDARG00000012199

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00066530 True 4612 mRNA 0.41 11 41887429 41901688

Neighbor

gene id symbol gene type direction distance location
XLOC_033979 orc6 coding upstream 61111 41812190 ~ 41826318 (+)
XLOC_033978 AL928906.1 coding upstream 126050 41761261 ~ 41761379 (+)
XLOC_033977 hrh3 coding upstream 134192 41748693 ~ 41753237 (+)
XLOC_033976 BX005319.2 coding upstream 304770 41582544 ~ 41582659 (+)
XLOC_033975 BX005319.1 coding upstream 426994 41459653 ~ 41460435 (+)
XLOC_033981 phkb coding downstream 304855 42206543 ~ 42346045 (+)
XLOC_033982 CU570782.3 coding downstream 412086 42313774 ~ 42313888 (+)
XLOC_033983 NA coding downstream 465751 42367439 ~ 42393494 (+)
XLOC_033984 adamts18 coding downstream 558614 42460302 ~ 42547992 (+)
XLOC_033985 NA coding downstream 650498 42552186 ~ 42849712 (+)
XLOC_033966 AL772146.1 non-coding upstream 774134 41112901 ~ 41113295 (+)
XLOC_033965 NA non-coding upstream 783092 40962728 ~ 41104337 (+)
XLOC_033986 NA non-coding downstream 711137 42612825 ~ 42617882 (+)
XLOC_033987 BX470088.1 non-coding downstream 818717 42720405 ~ 42720519 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000026_13019100_13028307 GPT2 coding CI01000026 null 13018120 ~ 13029368 (+)