XLOC_033979 (orc6)


Basic Information

Item Value
gene id XLOC_033979
gene name orc6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 41812190 ~ 41826318 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00066525
AAACAATACtgagaattattatttatgtatccATAATAGTAAAATTAGCTGCGTTGTGTCATTATAGAATAATAACTGAGGTAAATTGTATTTAGAAAATAATAGTTTCTCTGAACAACATTCGGTTAGCATctaatgacaataaaataatttaacgtCGCTTCGACagataaaaaatttatttacaaggaATTTATGTTGATCATGAACGACGTTATCCACGCCCATTTGTGAAGCAACCAATGACAGGCCAGAACGTTTATTCCTGGTGCGACACGTGTTCATTTTCGCGCGAAATTGTTCAGTGTTCTGTGGAGCGTCCTCTGTTGTGTTCTGCTGTGTTGTTGCAGTAAAGGGTTTATAAAATGGATAAAGAGTTGTTTCGTAAGCTTGCTTCGAAGATTGGGATAACATCGATTAAAGTGTTAAGTCAAGCAGAGGAGTACATGCGATTATCCCAAGTGAAATGTGTCGGCTTGGGTTCTGGGACTGCAACCAGCAAAGCTGTTATTTGTCTTGAATTGGCAGCGACTGCAATGAAGTTTCCTCTGGACAAGGAGTATGCCATCAAACTGTCTGGACTGAATCCTAAGGTCTACTCCAGCAATTTGAAGACTATGGAGTGCATGCTGGGCCTGCAGTCAAACCTGGGTCTCCGAGATCTAGCAGTCCAGTTTGGGTGTTTAGAAGCAGTTAAAGTGGCTTCTCAAATCCTTCAGCGGTATGAGACCAGTTTGCCTGCAGCTCAGCAGCAAGATCTTGACTTGACGAAGCCTCTCTTTACCACAGCGGCTCTGTATACAGCATGCAAGTGCATGAAAATCAGAACTGACAGGAAATTAGCCTCTTCATCTGGAGCCAAGAAGAGCATCTTTGACCGGCTCTGTGCACAGTTTCAGAAATTTGGACAGGAGATCTGCAATGAGGCTTCGTCTTTGGAGAAACCAGTCAAAGGCACTCAAAAGAGGCAGAAGACACTCACTGAAATGCTGGAAATGGAAGATGATGATAAACCTCTGACGTCTCCCAAGCAAGAGCGGGTTGAGAAGACTGAGGAGGAGGAGACTCACCACTATGAGGAGTGGAAGAGAAAAATCCTGGAAAATGCATTAAAAGCAAAAGCTGTAGATTCCTGAAGTAtgtacagttttatattttctttttatttaattgtggACTTTCATAATATCTGGAAGATCTCACTTGGAGCTGAATTCTGTATTCTACCAAGAGAAGTTGTATGCCCCCTTCTGGCTGCTTGAGTGAAATTTTTACCCACATACAGACATTACTAGAATAATTATGGCActttttattgtagttttgttTTAATGCCATTTTACCATTGCAAAAGAGTTTCTGATTGATTTTTTTATAATGTGGTAAGATGTTTAATCCTCATTTATATAATGTATTACAAATGGCAGCATTTTATCATAGCTCATTTAGCATGTCAGAATGAAACTGTTGAATCCATTACGGATTGGATGATTTACCTGGTTTTAATCTAAGCTCATTTCTCAGTGTTCTGTTGTATTGCTTTGGGTCGCTGTAATTCGTTATACTCGTCAAAGGAGGAGTATAACGACTCAAGGTCAACTGGAAGGGTTTTATTCGTTTGTTTTAATAAGACATGACTCATTTGCTTCCATTTGGATTTTAATGTGAATAAAATGGGTGTTCTTGACACAA
>TCONS_00066526
AAACAATACtgagaattattatttatgtatccATAATAGTAAAATTAGCTGCGTTGTGTCATTATAGAATAATAACTGAGGTAAATTGTATTTAGAAAATAATAGTTTCTCTGAACAACATTCGGTTAGCATctaatgacaataaaataatttaacgtCGCTTCGACagataaaaaatttatttacaaggaATTTATGTTGATCATGAACGACGTTATCCACGCCCATTTGTGAAGCAACCAATGACAGGCCAGAACGTTTATTCCTGGTGCGACACGTGTTCATTTTCGCGCGAAATTGTTCAGTGTTCTGTGGAGCGTCCTCTGTTGTGTTCTGCTGTGTTGTTGCAGTAAAGGGTTTATAAAATGGATAAAGAGTTGTTTCGTAAGCTTGCTTCGAAGATTGGGATAACATCGATTAAAGTGTTAAGTCAAGCAGAGGAGTACATGCGATTATCCCAAGTGAAATGTGTCGGCTTGGGTTCTGGGACTGCAACCAGCAAAGCTGTTATTTGTCTTGAATTGGCAGCGACTGCAATGAAGTTTCCTCTGGACAAGGAGTATGCCATCAAACTGTCTGGACTGAATCCTAAGGTCTACTCCAGCAATTTGAAGACTATGGAGTGCATGCTGGGCCTGCAGTCAAACCTGGGTCTCCGAGATCTAGCAGTCCAGTTTGGGTGTTTAGAAGCAGTTAAAGTGGCTTCTCAAATCCTTCAGCGGTATGAGACCAGTTTGCCTGCAGCTCAGCAGCAAGATCTTGACTTGACGAAGCCTCTCTTTACCACAGCGGCTCTGTATACAGCATGCAAGTGCATGAAAATCAGAACTGACAGGAAATTAGCCTCTTCATCTGGAGCCAAGAAGAGCATCTTTGACCGGCTCTGTGCACAGTTTCAGAAATTTGGACAGGAGATCTGCAATGAGGCTTCGTCTTTGGAGAAACCAGTCAAAGGCACTCAAAAGAGGCAGAAGACACTCACTGAAATGCTGGAAATGGAAGATGATGATAAACCTCTGACGTCTCCCAAGCAAGAGCGGGTTGAGAAGACTGAGGAGGAGGAGACTCACCACTATGAGGAGTGGAAGAGAAAAATCCTGGAAAATGCATTAAAAGCAAAAGCTGTAGATTCCTGAAGTTTGATGTCAGGATGCATTAAAAGAACCTGAGCAGGTCAAAGTGGGGCAATGATTGAGGGATGGAAGAGAAAAGTGAGGCTCTTATCCAGGAGCAGGAGGTCAGATGAGAGGAGAAATACGAGAGGGCGTATAGAAGTTTGTGAAATAGAATGTGTGACTTCTGGGTTAGTCTGCACTGTGAGGTTTTCATTAGTGGAGTAATGATGGATGAATACCATTTGGCGGACACAAGAAGGCTGGATATGAAGTCTTTGGCTTCCTCTGACACATTCTCGAATGCCTCCGTGTCAAATTCCCACTTGGCGTGCAGAATGTTGTTCATTGTTTCTGCGTCGTTGTCACCCATGAATGGAGAAAGGCCACTCAAACTGAAAAAATGAAATCACAGAGAGTGAAAATAACTTAAATCTGTTCACCCTTAGTTTTAAGCTTTTCAAGGTATGATGTGAAGAAGCAATTATGGGCAAAAGGTGCACTCGTTTCTTTTGTGCTGTTCTGGTCTATTTCTGAAATGTGCATAATTCACAGCACCGTGAATGTTGCTAGAATATAATTGATCAATTAGTCAGAAAaactttctttttcttcatttgCATGTTTAGTTTACGGTCATTATCTTAATAAATATCTacacttaaagggcacctgtgaTTAAAAATCagcttttggaagctgtttggacaaatcTGACTGTAGGTAtagtgtccactgtcatattggagtgatagaaacacaagtctctcttttttttttttctttcaattgcCTGATGTTTAAAAATGATCCAAATCCCCGTGatttttgaggcccaccgcattGTGACGTAGGTTTTCCCCACCCTCTGAATTAATTGACAAGTGCCATGTTTATATAAtaacatgtttatatattttgcaaataaactgggattaattT
>TCONS_00066527
CTCTGTTGTGTTCTGCTGTGTTGTTGCAGTAAAGGGTTTATAAAATGGATAAAGAGTTGTTTCGTAAGCTTGCTTCGAAGATTGGGATAACATCGATTAAAGTGTTAAGTCAAGCAGAGGAGTACATGCGATTATCCCAAGTGAAATGTGTCGGCTTGGGTTCTGGGACTGCAACCAGCAAAGCTGTTATTTGTCTTGAATTGGCAGCGACTGCAATGAAGTTTCCTCTGGACAAGGTACGACCCTGTTCCCTTTGTGTGCTGTGCAGTTTAAACATACACACGTAACTTGCATGACACTTTTATATGGCTGCGTATTTTCCCTCtctaatttatttgtttggtctTTATCTGCGTACTTTTTAGTGGCCATTATTCATCATACATAAGAGGAACTTTATATTATTGTGGTTTATTTCCTCACTCGCCACCACAGTCTAATATCTGTCATGTCTTGCATCATAATTTCTTATATTGATCAATATAGATTGAATTGTAATTCAGCAAGAAATCTGCTGGTATTTAAAGCAAATGACCTAACGTTATTCATTAAATAAGCCAAGACAAATTTTGAAGCTACAGTGGTACGTGTCCTAAATGCacacaaatcattttaaacagttgtgtccatcccttaaacaaaataaaaatgtatgcttTAGGAAAGTAAACATATTACATTTTCCATATGCACCAGATGTCATATTTAGTTTAAAGACAAGAAACACcatg
>TCONS_00066528
AACTTACTATTTAGTGGCTCGTCGCTTGCTTTGAGAGGACAATATTGGTAGCAGAACATCTTGACAACTCATCCATTTGTTTTCAGTCAAGCAGAGGAGTACATGCGATTATCCCAAGTGAAATGTGTCGGCTTGGGTTCTGGGACTGCAACCAGCAAAGCTGTTATTTGTCTTGAATTGGCAGCGACTGCAATGAAGTTTCCTCTGGACAAGGAGTATGCCATCAAACTGTCTGGACTGAATCCTAAGGTCTACTCCAGCAATTTGAAGACTATGGAGTGCATGCTGGGCCTGCAGTCAAACCTGGGTCTCCGAGATCTAGCAGTCCAGTTTGGGTGTTTAGAAGCAGTTAAAGTGGCTTCTCAAATCCTTCAGCGGTATGAGACCAGTTTGCCTGCAGCTCAGCAGCAAGATCTTGACTTGACGAAGCCTCTCTTTACCACAGCGGCTCTGTATACAGCATGCAAGTGCATGAAAATCAGAACTGACAGGAAATTAGCCTCTTCATCTGGAGCCAAGAAGAGCATCTTTGACCGGCTCTGTGCACAGTTTCAGAAATTTGGACAGGAGATCTGCAATGAGGCTTCGTCTTTGGAGAAACCAGTCAAAGGCACTCAAAAGAGGCAGAAGACACTCACTGAAATGCTGGAAATGGAAGATGATGATAAACCTCTGACGTCTCCCAAGCAAGAGCGGGTTGAGAAGACTGAGGAGGAGGAGACTCACCACTATGAGGAGTGGAAGAGAAAAATCCTGGAAAATGCATTAAAAGCAAAAGCTGTAGATTCCTGAAGTAtgtacagttttatattttctttttatttaattgtggACTTTCATAATATCTGGAAGATCTCACTTGGAGCTGAATTCTGTATTCTACCAAGAGAAGTTGTATGCCCCC
>TCONS_00066529
CAGCGACTGCAATGAAGTTTCCTCTGGACAAGGTGCATGAAAATCAGAACTGACAGGAAATTAGCCTCTTCATCTGGAGCCAAGAAGAGCATCTTTGACCGGCTCTGTGCACAGTTTCAGAAATTTGGACAGGAGATCTGCAATGAGGCTTCGTCTTTGGAGAAACCAGTCAAAGGCACTCAAAAGAGGCAGAAGACACTCACTGAAATGCTGGAAATGGAAGATGATGATAAACCTCTGACGTCTCCCAAGCAAGAGCGGGTTGAGAAGACTGAGGAGGAGGAGACTCACCACTATGAGGAGTGGAAGAGAAAAATCCTGGAAAATGCATTAAAAGCAAAAGCTGTAGATTCCTGAAGTAtgtacagttttatattttctttttatttaattgtggACTTTCATAATATCTGGAAGATCTCACTTGGAGCTGAATTCTGTATTCTACCAAGAGAAGTTGTATGCCCCCTTCTGGCTGCTTGAGTGAAATTTTTACCCACATACAGACATTACTAGAATAATTATGGCActttttattgtagttttgttTTAATGCCATTTTACCATTGCAAAAGAGTTTCTGATTGATTTTTTTATAATGTGGTAAGATGTTTAATCCTCATTTATATAATGTATTACAAATGGCAGCATTTTATCATAGCTCATTTAGCATGTCAGAATGAAACTGTTGAATCCATTACGGATTGGATGATTTACCTGGTTTTAATCTAAGCTCATTTCTCAGTGTTCTGTTGTATTGCTTTGGGTCGCTGTAATTCGTTATACTCGTCAAAGGAGGAGTATAACGACTCAAGGTCAACTGGAAGGGTTTTATTCGTTTGTTTTAATAAGACATGACTCATTTGCTTCCATTTGGATTTTAAT

Function

symbol description
orc6 Predicted to enable DNA binding activity. Acts upstream of or within cilium assembly. Predicted to be located in nucleus. Predicted to be part of nuclear origin of replication recognition complex. Is expressed in central nervous system; eye; intermediate cell mass of mesoderm; and pharyngeal arch. Human ortholog(s) of this gene implicated in Meier-Gorlin syndrome 3. Orthologous to human ORC6 (origin recognition complex subunit 6).

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0006270 DNA replication initiation biological_process
GO:0005664 nuclear origin of replication recognition complex cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast
ko03032 DNA replication proteins

ZFIN:

id description
ZDB-GENE-030131-2976 Predicted to enable DNA binding activity. Acts upstream of or within cilium assembly. Predicted to be located in nucleus. Predicted to be part of nuclear origin of replication recognition complex. Is expressed in central nervous system; eye; intermediate cell mass of mesoderm; and pharyngeal arch. Human ortholog(s) of this gene implicated in Meier-Gorlin syndrome 3. Orthologous to human ORC6 (origin recognition complex subunit 6).

Ensembl:

ensembl_id ENSDARG00000075682

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00066525 False 1692 mRNA 0.39 7 41812190 41821361
TCONS_00066526 False 2054 mRNA 0.41 8 41812190 41826318
TCONS_00066527 False 731 lncRNA 0.36 2 41812511 41813343
TCONS_00066528 False 904 mRNA 0.44 6 41812636 41820917
TCONS_00066529 True 885 mRNA 0.38 4 41812817 41821333

Neighbor

gene id symbol gene type direction distance location
XLOC_033978 AL928906.1 coding upstream 50811 41761261 ~ 41761379 (+)
XLOC_033977 hrh3 coding upstream 58953 41748693 ~ 41753237 (+)
XLOC_033976 BX005319.2 coding upstream 229531 41582544 ~ 41582659 (+)
XLOC_033975 BX005319.1 coding upstream 351755 41459653 ~ 41460435 (+)
XLOC_033974 chpf2 coding upstream 378404 41421998 ~ 41433786 (+)
XLOC_033980 gpt2 coding downstream 61111 41887429 ~ 41901688 (+)
XLOC_033981 phkb coding downstream 380225 42206543 ~ 42346045 (+)
XLOC_033982 CU570782.3 coding downstream 487456 42313774 ~ 42313888 (+)
XLOC_033983 NA coding downstream 541121 42367439 ~ 42393494 (+)
XLOC_033984 adamts18 coding downstream 633984 42460302 ~ 42547992 (+)
XLOC_033966 AL772146.1 non-coding upstream 698895 41112901 ~ 41113295 (+)
XLOC_033965 NA non-coding upstream 707853 40962728 ~ 41104337 (+)
XLOC_033985 NA non-coding downstream 725868 42552186 ~ 42849712 (+)
XLOC_033986 NA non-coding downstream 786507 42612825 ~ 42617882 (+)
XLOC_033987 BX470088.1 non-coding downstream 894087 42720405 ~ 42720519 (+)

Expression


Co-expression Network