RNA id: TCONS_00066528


Basic Information

Item Value
RNA id TCONS_00066528
length 904
RNA type mRNA
GC content 0.44
exon number 6
gene id XLOC_033979
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 41812190 ~ 41826318 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACTTACTATTTAGTGGCTCGTCGCTTGCTTTGAGAGGACAATATTGGTAGCAGAACATCTTGACAACTCATCCATTTGTTTTCAGTCAAGCAGAGGAGTACATGCGATTATCCCAAGTGAAATGTGTCGGCTTGGGTTCTGGGACTGCAACCAGCAAAGCTGTTATTTGTCTTGAATTGGCAGCGACTGCAATGAAGTTTCCTCTGGACAAGGAGTATGCCATCAAACTGTCTGGACTGAATCCTAAGGTCTACTCCAGCAATTTGAAGACTATGGAGTGCATGCTGGGCCTGCAGTCAAACCTGGGTCTCCGAGATCTAGCAGTCCAGTTTGGGTGTTTAGAAGCAGTTAAAGTGGCTTCTCAAATCCTTCAGCGGTATGAGACCAGTTTGCCTGCAGCTCAGCAGCAAGATCTTGACTTGACGAAGCCTCTCTTTACCACAGCGGCTCTGTATACAGCATGCAAGTGCATGAAAATCAGAACTGACAGGAAATTAGCCTCTTCATCTGGAGCCAAGAAGAGCATCTTTGACCGGCTCTGTGCACAGTTTCAGAAATTTGGACAGGAGATCTGCAATGAGGCTTCGTCTTTGGAGAAACCAGTCAAAGGCACTCAAAAGAGGCAGAAGACACTCACTGAAATGCTGGAAATGGAAGATGATGATAAACCTCTGACGTCTCCCAAGCAAGAGCGGGTTGAGAAGACTGAGGAGGAGGAGACTCACCACTATGAGGAGTGGAAGAGAAAAATCCTGGAAAATGCATTAAAAGCAAAAGCTGTAGATTCCTGAAGTAtgtacagttttatattttctttttatttaattgtggACTTTCATAATATCTGGAAGATCTCACTTGGAGCTGAATTCTGTATTCTACCAAGAGAAGTTGTATGCCCCC

Function

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0006270 DNA replication initiation biological_process
GO:0005664 nuclear origin of replication recognition complex cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast
ko03032 DNA replication proteins

ZFIN:

id description
ZDB-GENE-030131-2976 Predicted to enable DNA binding activity. Acts upstream of or within cilium assembly. Predicted to be located in nucleus. Predicted to be part of nuclear origin of replication recognition complex. Is expressed in central nervous system; eye; intermediate cell mass of mesoderm; and pharyngeal arch. Human ortholog(s) of this gene implicated in Meier-Gorlin syndrome 3. Orthologous to human ORC6 (origin recognition complex subunit 6).

Ensembl:

ensembl_id ENSDART00000174333

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00066516 lncRNA upstream 488003 41322445 ~ 41324633 (+) False XLOC_033972
TCONS_00068921 lncRNA upstream 509776 41295976 ~ 41302860 (+) False XLOC_033969
TCONS_00068924 lncRNA downstream 546522 42367439 ~ 42387340 (+) False XLOC_033983
TCONS_00068926 lncRNA downstream 546540 42367457 ~ 42391959 (+) False XLOC_033983
TCONS_00068925 lncRNA downstream 546540 42367457 ~ 42391959 (+) False XLOC_033983
TCONS_00066536 lncRNA downstream 546550 42367467 ~ 42387360 (+) False XLOC_033983
TCONS_00068928 lncRNA downstream 546553 42367470 ~ 42387340 (+) False XLOC_033983
TCONS_00066522 mRNA upstream 59399 41748693 ~ 41753237 (+) False XLOC_033977
TCONS_00066523 mRNA upstream 59399 41748794 ~ 41753237 (+) True XLOC_033977
TCONS_00066519 mRNA upstream 378850 41421998 ~ 41433786 (+) True XLOC_033974
TCONS_00066518 mRNA upstream 462238 41340520 ~ 41350398 (+) True XLOC_033973
TCONS_00066517 mRNA upstream 486342 41322502 ~ 41326294 (+) True XLOC_033972
TCONS_00066530 mRNA downstream 66512 41887429 ~ 41901688 (+) True XLOC_033980
TCONS_00066531 mRNA downstream 385626 42206543 ~ 42346045 (+) False XLOC_033981
TCONS_00066532 mRNA downstream 385930 42206847 ~ 42264849 (+) False XLOC_033981
TCONS_00066533 mRNA downstream 387942 42208859 ~ 42345172 (+) False XLOC_033981
TCONS_00066535 mRNA downstream 507661 42328578 ~ 42341691 (+) True XLOC_033981
TCONS_00066524 other upstream 51257 41761261 ~ 41761379 (+) True XLOC_033978
TCONS_00066521 other upstream 229977 41582544 ~ 41582659 (+) True XLOC_033976
TCONS_00066520 other upstream 352201 41459653 ~ 41460435 (+) True XLOC_033975
TCONS_00066511 other upstream 510024 41301321 ~ 41302612 (+) True XLOC_033969
TCONS_00066505 other upstream 557389 41254621 ~ 41255247 (+) False XLOC_033968
TCONS_00066534 other downstream 492857 42313774 ~ 42313888 (+) True XLOC_033982
TCONS_00066541 other downstream 899488 42720405 ~ 42720519 (+) True XLOC_033987
TCONS_00066543 other downstream 957083 42778000 ~ 42778114 (+) True XLOC_033988
TCONS_00066548 other downstream 2548646 44369563 ~ 44369679 (+) True XLOC_033998
TCONS_00066570 other downstream 4142868 45963785 ~ 45971526 (+) False XLOC_034020

Expression Profile

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